Pre_GI Gene

Host: NC_004337:3590323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004337:3590323 Shigella flexneri 2a str. 301, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
359032335914471125putative transporterQuickGO ontologyBLASTP
359144735941822736putative ATP-binding component of a transport systemQuickGO ontologyBLASTP
359417935952461068hypothetical proteinBLASTP
359561235972341623hypothetical proteinBLASTP
359749635992711776hypothetical proteinBLASTP
36005883601103516hypothetical proteinBLASTP
36010573601821765hypothetical proteinBLASTP
36020673602828762hypothetical proteinBLASTP
36029353603447513hypothetical proteinBLASTP
360358636047341149hypothetical proteinBLASTP
36047813605191411insertion sequence 2 OrfA proteinQuickGO ontologyBLASTP
36051493606054906insertion sequence 2 OrfB proteinQuickGO ontologyBLASTP
36059793606866888putative outer membrane pore proteinQuickGO ontologyBLASTP
36068873607171285hypothetical proteinBLASTP
36072283608040813hypothetical proteinBLASTP
36083603608683324putative IS1 encoded proteinQuickGO ontologyBLASTP
36087583609261504IS1 ORF2QuickGO ontologyBLASTP
36098903610807918putative periplasmic binding transport proteinQuickGO ontologyBLASTP
36109443611270327putative IS1 encoded proteinQuickGO ontologyBLASTP
36113453611848504IS1 ORF2QuickGO ontologyBLASTP
361206636132651200hypothetical proteinBLASTP
361349736149961500low-affinity phosphate transport proteinQuickGO ontologyBLASTP
36150673615402336universal stress protein UspBQuickGO ontologyBLASTP
36157963616230435universal stress proteinQuickGO ontologyBLASTP
36180663618818753hypothetical proteinBLASTP
361882636208682043oligopeptidase AQuickGO ontologyBLASTP
36210713621913843hypothetical proteinBLASTP
362198536233371353glutathione reductaseQuickGO ontologyBLASTP
36242503624645396IS1 ORF2QuickGO ontologyBLASTP
36246723624947276IS1 ORF1QuickGO ontologyBLASTP
36249893625534546hypothetical proteinBLASTP
362540136266901290arsenical pump membrane proteinQuickGO ontologyBLASTP
36267033627128426arsenate reductaseQuickGO ontologyBLASTP
36274783627981504IS1 ORF2QuickGO ontologyBLASTP
36280123628968957hypothetical proteinBLASTP
362954936307721224hypothetical proteinBLASTP
36309863631585600outer membrane protein induced after carbon starvationQuickGO ontologyBLASTP
36317413632271531hypothetical proteinBLASTP
36330233633361339hypothetical proteinBLASTP
36334653633797333hypothetical proteinBLASTP
36340523634624573hypothetical proteinBLASTP
36354233635950528hypothetical proteinBLASTP
36362893637193905BLASTP
36373473637742396IS1 ORF2QuickGO ontologyBLASTP
36377693638044276IS1 ORF1QuickGO ontologyBLASTP
363831536399641650cytoplasmic trehalaseQuickGO ontologyBLASTP
36414523642054603putative regulatorQuickGO ontologyBLASTP
36425023643473972putative transcriptional regulator LYSR-typeQuickGO ontologyBLASTP
364352236445351014hypothetical proteinBLASTP
364494636462681323putative transport proteinQuickGO ontologyBLASTP
364645036485102061hypothetical proteinBLASTP
36485803649347768hypothetical proteinBLASTP
364936036505081149ketodeoxygluconokinaseQuickGO ontologyBLASTP
365060436521001497hypothetical proteinBLASTP
365232136536071287C4-dicarboxylate transport proteinQuickGO ontologyBLASTP
365379336557421950hypothetical proteinBLASTP
365928736615962310hypothetical proteinBLASTP
36642513665003753hypothetical proteinBLASTP
36651773665572396IS1 ORF2QuickGO ontologyBLASTP
36655993665874276IS1 ORF1QuickGO ontologyBLASTP
366607236676431572putative proteaseQuickGO ontologyBLASTP
36676403667831192hypothetical protein
366782836695071680hypothetical proteinBLASTP
36695943669869276hypothetical proteinBLASTP
36700773670352276hypothetical proteinBLASTP
36705603670802243hypothetical proteinBLASTP
367162636728971272putative transporter proteinQuickGO ontologyBLASTP
367292736739311005putative ATP-binding component of dipeptide transport systemQuickGO ontologyBLASTP
36739283674911984putative ATP-binding component of dipeptide transport systemQuickGO ontologyBLASTP
36749223675824903dipeptide transport system permease protein 2QuickGO ontologyBLASTP
367583436768531020dipeptide transport system permease protein 1QuickGO ontologyBLASTP
367716136787681608dipeptide transport proteinQuickGO ontologyBLASTP
367984836815721725hypothetical proteinBLASTP
368186336830711209putative resistance proteinQuickGO ontologyBLASTP
36833003683998699putative lipaseQuickGO ontologyBLASTP
368415636847195643-methyl-adenine DNA glycosylase IQuickGO ontologyBLASTP
36847163685156441hypothetical proteinBLASTP
368512536874042280biotin sulfoxide reductaseQuickGO ontologyBLASTP
36876453688271627putative outer membrane proteinQuickGO ontologyBLASTP
368837536893499752-hydroxyacid dehydrogenaseQuickGO ontologyBLASTP
36893993690229831hypothetical proteinBLASTP
36911143691326213cold shock protein 74 transcriptional activator of hnsQuickGO ontologyBLASTP
36917673692618852IS150 ORF2QuickGO ontologyBLASTP
36926153693283669IS150 ORF1ORF AQuickGO ontologyBLASTP
36933583693861504IS1 ORF2QuickGO ontologyBLASTP
369392036953171398putative cytochrome C peroxidaseQuickGO ontologyBLASTP
369552836969281401glutamate decarboxylase isozymeQuickGO ontologyBLASTP
36972983698122825putative ARAC-type regulatory proteinQuickGO ontologyBLASTP
36984903699218729putative ARAC-type regulatory proteinQuickGO ontologyBLASTP
36995813700525945acriflavine resistance proteinQuickGO ontologyBLASTP
370061037026942085acriflavine resistance proteinQuickGO ontologyBLASTP
37027193703015297BLASTP
37032363703511276IS1 ORF1QuickGO ontologyBLASTP
37035383703933396IS1 ORF2QuickGO ontologyBLASTP
370399137060602070glycyl-tRNA synthetase beta subunitQuickGO ontologyBLASTP
37060703706981912glycyl-tRNA synthetase alpha subunitQuickGO ontologyBLASTP
37070763707375300hypothetical proteinBLASTP
37075503708545996hypothetical proteinBLASTP
37085873709024438hypothetical proteinBLASTP
37090703709411342hypothetical proteinBLASTP
370958037110341455xylulokinaseQuickGO ontologyBLASTP
37127943713786993xylose binding proteinQuickGO ontologyBLASTP
371386437154051542putative ATP-binding protein of xylose transport systemQuickGO ontologyBLASTP
371538337165641182putative xylose transporter membrane componentQuickGO ontologyBLASTP
37179283718752825putative ATP-binding proteinQuickGO ontologyBLASTP
371907237211022031periplasmic alpha-amylase precursorQuickGO ontologyBLASTP
372128037225331254valine--pyruvate transaminaseQuickGO ontologyBLASTP
37226843723157474hypothetical proteinBLASTP
37232593724107849putative regulatorQuickGO ontologyBLASTP
37243073725305999putative dehydrogenaseQuickGO ontologyBLASTP
37255203725795276IS1 ORF1QuickGO ontologyBLASTP
37258223726217396IS1 ORF2QuickGO ontologyBLASTP
372655137278431293hypothetical proteinBLASTP
37278773728152276IS1 ORF1QuickGO ontologyBLASTP
37281793728574396IS1 ORF2QuickGO ontologyBLASTP
372927037308981629aldehyde dehydrogenase B lactaldehyde dehydrogenaseQuickGO ontologyBLASTP
373097337321241152putative oxidoreductaseQuickGO ontologyBLASTP
373231437341581845selenocysteinyl-tRNA-specific translation factorQuickGO ontologyBLASTP
373415537355461392selenocysteine synthaseQuickGO ontologyBLASTP
37356443736252609putative S-transferaseQuickGO ontologyBLASTP
373632337374081086hypothetical proteinBLASTP
37374113737773363hypothetical proteinBLASTP
373831037402231914PTS system mannitol-specific enzyme IIABC componentsQuickGO ontologyBLASTP
374031837414661149mannitol-1-phosphate 5-dehydrogenaseQuickGO ontologyBLASTP
37414663742053588repressor for mtlQuickGO ontologyBLASTP
37425583742920363hypothetical proteinBLASTP
37430393743434396IS1 ORF2QuickGO ontologyBLASTP
37434613743736276IS1 ORF1QuickGO ontologyBLASTP
37443753744923549hypothetical proteinBLASTP
374496737461151149hypothetical proteinBLASTP
374665737496292973hypothetical proteinBLASTP
374999737516521656L-lactate permeaseQuickGO ontologyBLASTP
37516523752428777transcriptional regulatorQuickGO ontologyBLASTP
375242537536151191L-lactate dehydrogenaseQuickGO ontologyBLASTP
37538113754284474hypothetical proteinBLASTP
37543373755158822serine acetyltransferaseQuickGO ontologyBLASTP
375523837562571020NADPH-dependent glycerol-3-phosphate dehydrogenaseQuickGO ontologyBLASTP
37562573756724468export protein SecBQuickGO ontologyBLASTP
37567873757038252glutaredoxin 3QuickGO ontologyBLASTP
37571803757611432hypothetical proteinBLASTP
375785637594001545phosphoglyceromutaseQuickGO ontologyBLASTP
375943437606931260hypothetical proteinBLASTP
37608233761656834hypothetical proteinBLASTP
37618653762260396IS1 ORF2QuickGO ontologyBLASTP
37622873762562276IS1 ORF1QuickGO ontologyBLASTP
376279237638171026L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3763827376502311972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
37652983766155858involved in lipopolysaccharide biosynthesisQuickGO ontologyBLASTP
37664593767391933ADP-L-glycero-D-mannoheptose-6-epimeraseQuickGO ontologyBLASTP
376740137684471047ADP-heptose--lps heptosyltransferase IIQuickGO ontologyBLASTP
37684813769443963heptosyl transferase IQuickGO ontologyBLASTP
376944037706481209lipid A-core surface polymer ligaseQuickGO ontologyBLASTP
377068437718261143lipopolysaccharide 12-N- acetylglucosaminetransferaseQuickGO ontologyBLASTP
377183537728481014putative UDP-glucosegalactosyl LPS alpha12-glucosyltransferaseQuickGO ontologyBLASTP
37728733773580708putative LPS biosynthesis proteinQuickGO ontologyBLASTP
377360637746131008UDP-D-galactoseglucosyllipopolysaccharide- alpha-13-D-galactosyltransferaseQuickGO ontologyBLASTP
37746563775462807lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
377544637765701125LPS alpha13-glucosyltransferaseQuickGO ontologyBLASTP
377656737776251059lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
37779833778378396IS1 ORF2QuickGO ontologyBLASTP
37784053778680276IS1 ORF1QuickGO ontologyBLASTP
3778854378013112783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
37801393780618480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
37806573781466810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
3781564378173116850S ribosomal protein L33QuickGO ontologyBLASTP
3781752378198823750S ribosomal protein L28QuickGO ontologyBLASTP
37822053782873669DNA repair protein RadCQuickGO ontologyBLASTP
378297337842651293phosphopantothenoylcysteine synthasedecarboxylaseQuickGO ontologyBLASTP
37842433784701459deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
37847663785404639nucleoid occlusion proteinQuickGO ontologyBLASTP
37854413786082642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP
37861483786864717ribonuclease PHQuickGO ontologyBLASTP
37869913787854864putative alpha helix proteinQuickGO ontologyBLASTP
37880753788899825DNA-damage-inducible proteinQuickGO ontologyBLASTP
37891363789807672hypothetical proteinBLASTP
378980437914861683DNA ligaseQuickGO ontologyBLASTP
37913473791610264hypothetical protein
37917443792367624guanylate kinaseQuickGO ontologyBLASTP
37924223792697276DNA-directed RNA polymerase omega subunitQuickGO ontologyBLASTP
379271637948242109pppGpp synthetase II and guanosine-35-bis pyrophosphate 3-pyrophosphohydrolaseQuickGO ontologyBLASTP
37948313795520690putative RNA methylaseQuickGO ontologyBLASTP
379552637976072082DNA helicaseQuickGO ontologyBLASTP
379764137988461206glutamate transport proteinQuickGO ontologyBLASTP
379912638005171392putative transport proteinQuickGO ontologyBLASTP
380063838023471710hypothetical proteinBLASTP
380240038047182319hypothetical proteinBLASTP
3806404380649491tRNA-SecQuickGO ontologyBLASTP
380677038079811212putative integraseQuickGO ontologyBLASTP
380839338094361044hypothetical proteinBLASTP
38099513810412462hypothetical proteinBLASTP
38104093810900492IS3 ORF2QuickGO ontologyBLASTP
38108723811264393hypothetical proteinBLASTP
38112613811560300IS3 ORF1QuickGO ontologyBLASTP
38117453812263519hypothetical proteinBLASTP
38123443813012669IS629 ORF2QuickGO ontologyBLASTP
38132273813553327IS629 ORF1QuickGO ontologyBLASTP
38142233814495273hypothetical proteinBLASTP
38145563815461906insertion sequence 2 OrfB proteinQuickGO ontologyBLASTP
38154193815829411insertion sequence 2 OrfA proteinQuickGO ontologyBLASTP
38161513816345195hypothetical proteinBLASTP
38171033817501399colV-immunity proteinQuickGO ontology
38180223818525504IS1 ORF2QuickGO ontologyBLASTP
38186003819571972hypothetical proteinBLASTP
381952138207141194putative membrane transport proteinQuickGO ontologyBLASTP
382079338225741782siderophore biosynthesis proteinQuickGO ontologyBLASTP
38225753823522948siderophore biosynthesis proteinQuickGO ontologyBLASTP
382352238252641743siderophore biosynthesis proteinQuickGO ontologyBLASTP
382526138265981338lysineN6-hydroxylaseQuickGO ontologyBLASTP
382660438287992196putative ferric siderophore receptorQuickGO ontologyBLASTP
38297203830478759similar to serine proteaseQuickGO ontologyBLASTP
38304493831354906insertion sequence 2 OrfB proteinQuickGO ontologyBLASTP
38313123831722411insertion sequence 2 OrfA proteinQuickGO ontologyBLASTP
383182338343452523putative long polar fimbriaeQuickGO ontologyBLASTP
38345033834898396IS1 ORF2QuickGO ontologyBLASTP
38349253835200276IS1 ORF1QuickGO ontologyBLASTP
38355113836206696putative fimbrial proteinQuickGO ontologyBLASTP
383645438374941041high-affinity phosphate-specific transport protein periplasmic phosphate-binding proteinQuickGO ontologyBLASTP
38376413838540900high-affinity phosphate-specific transport protein cytoplasmic membrane componentQuickGO ontologyBLASTP
38385403839430891high-affinity phosphate-specific transport proteinQuickGO ontologyBLASTP
38395223840295774ATP-binding component of high-affinity phosphate-specific transport systemQuickGO ontologyBLASTP
38403103841035726negative regulator for pho regulon and putative enzyme in phosphate metabolismQuickGO ontologyBLASTP
38413223842143822positive regulation of bgl operonQuickGO ontologyBLASTP
384227738441541878PTS system beta-glucosides enzyme II crypticQuickGO ontologyBLASTP
38452563845531276IS1 ORF1QuickGO ontologyBLASTP
38455583845953396IS1 ORF2QuickGO ontologyBLASTP
384646838480451578putative receptor proteinQuickGO ontologyBLASTP
384807238492471176putative xylanaseQuickGO ontologyBLASTP
38492493849971723hypothetical proteinBLASTP
38506243851430807ISSfl4 ORF3QuickGO ontologyBLASTP
38515603851907348ISSfl4 ORF2QuickGO ontologyBLASTP
38519043852578675ISSfl4 ORF1QuickGO ontologyBLASTP
38527463853219474hypothetical protein
38532863853942657putative phosphataseQuickGO ontologyBLASTP
385410738554441338putative membrane transport proteinQuickGO ontologyBLASTP
38554983856064567hypothetical proteinBLASTP
38560863856835750hypothetical proteinBLASTP
38573703857672303IS600 ORF1QuickGO ontologyBLASTP
38577083858526819IS600 ORF2QuickGO ontologyBLASTP
385919338603681176putative transport proteinQuickGO ontologyBLASTP
386050038617471248low-affinity tryptophan permeaseQuickGO ontologyBLASTP
386183838632531416tryptophanaseQuickGO ontologyBLASTP
3863474386354875tryptophanase leader peptideQuickGO ontology
38636553863930276IS1 ORF1QuickGO ontologyBLASTP
38639573864352396IS1 ORF2QuickGO ontologyBLASTP
386456738659311365tRNA modification GTPaseQuickGO ontologyBLASTP
386603738676831647inner membrane protein translocase component YidCQuickGO ontologyBLASTP
38679073868266360ribonuclease PQuickGO ontologyBLASTP
3868283386842314150S ribosomal protein L34QuickGO ontologyBLASTP
386909938703251227replication initiation protein DnaAQuickGO ontologyBLASTP
387043638715361101DNA polymerase III subunit betaQuickGO ontologyBLASTP
387153638726091074recombination protein FQuickGO ontologyBLASTP
387263838750522415DNA gyrase subunit BQuickGO ontologyBLASTP
38752923875690399hypothetical proteinBLASTP
38758043876616813hypothetical proteinBLASTP
38766623877318657putative replicaseQuickGO ontology
38775963878285690regulator protein for dgo operonQuickGO ontologyBLASTP
387828238791608792-oxo-3-deoxygalactonate kinaseQuickGO ontologyBLASTP
388098138823181338D-galactonate transport proteinQuickGO ontologyBLASTP
388227938833791101hypothetical proteinBLASTP
388344438847181275hypothetical proteinBLASTP
38847203885127408hypothetical proteinBLASTP
38853573885770414heat shock proteinQuickGO ontologyBLASTP
38858823886310429heat shock proteinQuickGO ontologyBLASTP
388650638881671662hypothetical proteinBLASTP
38882063888880675putative transcriptional regulatorQuickGO ontologyBLASTP
38903063890791486PTS system arbutin-like IIB componentQuickGO ontologyBLASTP
38916023892495894putative ARAC-type regulatory proteinQuickGO ontologyBLASTP
389266238943771716putative cotransporterQuickGO ontologyBLASTP
38959013896314414hypothetical proteinBLASTP
38964233896770348hypothetical proteinBLASTP
38967603897122363hypothetical proteinBLASTP
38971193897616498putative transcriptional regulatorQuickGO ontologyBLASTP
389762438986761053multidrug resistance protein DQuickGO ontologyBLASTP
389873739003351599acetolactate synthase large subunitQuickGO ontologyBLASTP
39003393900629291acetolactate synthase small subunitQuickGO ontologyBLASTP
39007043901294591response regulatorQuickGO ontologyBLASTP
390129439027961503sensor histidine protein kinase phosphorylates UhpAQuickGO ontologyBLASTP
390280639041251320regulator of uhpTQuickGO ontologyBLASTP
390426339056541392hexose phosphate transport proteinQuickGO ontologyBLASTP
390570039074661767probable adenine deaminase synthesis xanthineQuickGO ontologyBLASTP
390756339089751413hypothetical proteinBLASTP
39090013909480480hypothetical proteinBLASTP
390952639108811356putative transport proteinQuickGO ontologyBLASTP
39109223911215294putative transport proteinQuickGO ontologyBLASTP
39114703911772303IS600 ORF1QuickGO ontologyBLASTP
39118083912626819IS600 ORF2QuickGO ontologyBLASTP
39126673913173507putative secreted autotransporter toxinQuickGO ontologyBLASTP
39137113914700990similar to serine proteaseQuickGO ontologyBLASTP
39147573915167411insertion sequence 2 OrfA proteinQuickGO ontologyBLASTP
39151253916030906insertion sequence 2 OrfB proteinQuickGO ontologyBLASTP
39167963917368573putative major fimbrial subunitQuickGO ontologyBLASTP
391766039190061347IS4 ORFQuickGO ontologyBLASTP
391910939209381830D-fructose-6-phosphate amidotransferaseQuickGO ontologyBLASTP
392110039224701371bifunctional N-acetylglucosamine-1-phosphate uridyltransferaseglucosamine-1-phosphate acetyltransferaseQuickGO ontologyBLASTP
39228213923234414ATP synthase subunit epsilonQuickGO ontologyBLASTP
392326139246431383ATP synthase subunit BQuickGO ontologyBLASTP
39246703925533864ATP synthase subunit CQuickGO ontologyBLASTP
392558439271251542ATP synthase subunit AQuickGO ontologyBLASTP
39271383927671534ATP synthase subunit DQuickGO ontologyBLASTP
39276863928156471ATP synthase subunit BQuickGO ontologyBLASTP
39282183928457240ATP synthase subunit CQuickGO ontologyBLASTP
39285043929319816ATP synthase subunit AQuickGO ontologyBLASTP
39293283929720393ATP synthase subunit IQuickGO ontology
39303253930948624glucose-inhibited division protein BQuickGO ontologyBLASTP
393101239329011890glucose-inhibited division protein AQuickGO ontologyBLASTP
39332803933723444flavodoxinQuickGO ontologyBLASTP
39338133934271459regulator for asnA asnC and gidAQuickGO ontologyBLASTP
39344233935415993asparagine synthetase AsnAQuickGO ontologyBLASTP
393542039368711452hypothetical proteinBLASTP
393686539383851521putative 2-component regulatorQuickGO ontologyBLASTP
393851739398631347IS4 ORFQuickGO ontologyBLASTP
394002139418891869low-affinity potassium transport proteinQuickGO ontologyBLASTP
39420563942475420D-ribose high-affinity transport system membrane-associated proteinQuickGO ontologyBLASTP
39428903943165276IS1 ORF1QuickGO ontologyBLASTP
39431923943587396IS1 ORF2QuickGO ontologyBLASTP
39447693945734966ribose high-affinity ABC transporter permease componentQuickGO ontologyBLASTP
39467603947704945ribokinaseQuickGO ontologyBLASTP
39477173948700984regulator for rbs operonQuickGO ontologyBLASTP
394866639500691404putative transport proteinQuickGO ontologyBLASTP
39501163950664549hypothetical proteinBLASTP