Pre_GI Gene

Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:1174650 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
117465011759721323cell cycle proteinQuickGO ontologyBLASTP
11760581176318261modulator of rho-dependent transcription terminationQuickGO ontologyBLASTP
11767451177299555hypothetical proteinBLASTP
11773681178066699copper homeostasis lipoproteinQuickGO ontologyBLASTP
117813911807032565DNA mismatch repair proteinQuickGO ontologyBLASTP
118086211823311470putative integraseQuickGO ontologyBLASTP
11823911182576186hypothetical proteinBLASTP
118264011839111272putative phage-related reverse transcriptasematurase family proteinQuickGO ontologyBLASTP
118390811859172010phage-related hypothetical proteinQuickGO ontologyBLASTP
11861811186795615hypothetical proteinBLASTP
118719711884081212putative integraseQuickGO ontologyBLASTP
118840111898941494putative integraseQuickGO ontologyBLASTP
118989411918581965putative integraseQuickGO ontologyBLASTP
11918391192258420hypothetical proteinBLASTP
11923391192806468hypothetical proteinBLASTP
11928611193283423hypothetical proteinBLASTP
119340911947041296hypothetical proteinBLASTP
11947101195108399hypothetical proteinBLASTP
119530111966441344hypothetical proteinBLASTP
11973761198215840hypothetical proteinBLASTP
11986501199129480hypothetical proteinBLASTP
119933012007541425putative 3-polyprenyl-4-hydroxybenzoate carboxy-lyaseQuickGO ontologyBLASTP
12007691200996228hypothetical proteinBLASTP
12010771201706630glutathione S-transferaseQuickGO ontologyBLASTP
12019001202667768ironIII dicitrate transport ATP-binding proteinQuickGO ontologyBLASTP
12026681203627960ironIII dicitrate transport system permease proteinQuickGO ontologyBLASTP
12036271204622996ironIII dicitrate transport system permease proteinQuickGO ontologyBLASTP
12046191205533915ironIII dicitrate-binding periplasmic proteinQuickGO ontologyBLASTP
120560712079552349ironIII dicitrate transport proteinQuickGO ontologyBLASTP
12081671209129963ironIII dicitrate sensor proteinQuickGO ontologyBLASTP
12091261209647522RNA polymerase sigma-70 factorQuickGO ontologyBLASTP
12096931209875183hypothetical protein
120994012115621623probable transcriptional regulatorQuickGO ontologyBLASTP