Pre_GI Gene

Host: NC_004547:3866439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:3866439 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
386503938664421404multidrug resistance outer membrane proteinQuickGO ontologyBLASTP
386643938695823144multidrug resistance proteinQuickGO ontologyBLASTP
386966538708371173multidrug resistance proteinQuickGO ontologyBLASTP
38710273871593567transcriptional regulator of multidrug resistance genesQuickGO ontologyBLASTP
38720003872587588hypothetical proteinBLASTP
38729833873474492hypothetical proteinBLASTP
38734673874063597cell filamentation proteinQuickGO ontologyBLASTP
38740713874256186putative phage capsid protein partialQuickGO ontologyBLASTP
38742533874501249bacteriophage regulatory proteinQuickGO ontologyBLASTP
38746203874775156hypothetical proteinBLASTP
38752643876157894hypothetical proteinBLASTP
38761573876780624hypothetical proteinBLASTP
38768913877589699hypothetical proteinBLASTP
387758938788301242hypothetical proteinBLASTP
387883038800561227phage integraseQuickGO ontologyBLASTP
3880169388024476tRNA-ThrQuickGO ontologyBLASTP
38807723881191420hypothetical proteinBLASTP
388146238827151254gamma-glutamyl phosphate reductaseQuickGO ontologyBLASTP
388272638838291104gamma-glutamyl kinaseQuickGO ontologyBLASTP
38839533884327375curlin genes transcriptional activatorQuickGO ontologyBLASTP
388443238856821251hypothetical proteinBLASTP
38858993886357459xanthine phosphoribosyltransferaseQuickGO ontologyBLASTP
388680038882601461aminoacyl-histidine dipeptidaseQuickGO ontologyBLASTP
388832438893821059DNA polymerase IVQuickGO ontologyBLASTP
38894583890258801putative DNA-binding proteinQuickGO ontologyBLASTP
38905043891274771putative methyltransferaseQuickGO ontologyBLASTP
38916683892402735hypothetical proteinBLASTP
38923733893140768hypothetical proteinBLASTP