Pre_GI Gene

Host: NC_004547:442927 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:442927 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4429274447051779putative activator or transporter protein of haemolysin-like proteinQuickGO ontologyBLASTP
451996452394399hypothetical proteinBLASTP
452395452937543RNA 2-phosphotransferaseQuickGO ontologyBLASTP
4532614549611701putative haemolysin-like proteinQuickGO ontologyBLASTP
454963455337375hypothetical proteinBLASTP
455619456002384hypothetical proteinBLASTP
456048456269222hypothetical proteinBLASTP
456305456442138putative hemagglutinin-like protein partialQuickGO ontologyBLASTP
456426456719294putative phage-related proteinQuickGO ontologyBLASTP
457211457861651hypothetical proteinBLASTP
4580554609102856valyl-tRNA synthetaseQuickGO ontologyBLASTP
460923461372450DNA polymerase III subunit chiQuickGO ontologyBLASTP
4617374632481512leucyl aminopeptidaseQuickGO ontologyBLASTP
4635314646461116putative permeaseQuickGO ontologyBLASTP
4646464657221077putative permeaseQuickGO ontologyBLASTP
46594046602485tRNA-LeuQuickGO ontologyBLASTP
466210466377168putative integrase partialQuickGO ontologyBLASTP
466558466815258putative plasmid-related proteinQuickGO ontologyBLASTP
466819467094276putative plasmid-related proteinQuickGO ontologyBLASTP
467142467654513putative kinaseQuickGO ontologyBLASTP
4693964728843489hypothetical proteinBLASTP
473425473673249putative bacteriophage regulatory proteinQuickGO ontologyBLASTP
4760144771351122hypothetical proteinBLASTP
4774324785621131putative exported lipaseQuickGO ontologyBLASTP
4786174798071191hypothetical proteinBLASTP
4798014809191119hypothetical proteinBLASTP
480919481917999hypothetical proteinBLASTP
4819144833351422putative outer membrane efflux proteinQuickGO ontologyBLASTP
4837054851441440aspartate ammonia-lyaseQuickGO ontologyBLASTP
485398486354957LysR-family transcriptional regulatorQuickGO ontologyBLASTP