Pre_GI Gene

Host: NC_004547:913553 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:913553 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9135539170863534pyruvate-flavodoxin oxidoreductaseQuickGO ontologyBLASTP
917476917901426hypothetical protein
918246918758513putative GNAT-family acetyltransferaseQuickGO ontologyBLASTP
918802919428627putative amino acid efflux proteinQuickGO ontologyBLASTP
919625920407783putative amino acid-binding periplasmic proteinQuickGO ontologyBLASTP
920665921243579hypothetical proteinBLASTP
921448921897450hypothetical proteinBLASTP
921906922199294putative transposase partialQuickGO ontologyBLASTP
922240922566327putative phage capsid protein partialQuickGO ontologyBLASTP
922585922755171phage regulatory proteinQuickGO ontologyBLASTP
9230689255122445hypothetical proteinBLASTP
9255419268211281prophage integraseQuickGO ontologyBLASTP
927358927840483SsrA-binding proteinQuickGO ontologyBLASTP
927996928442447hypothetical proteinBLASTP
928432928713282hypothetical proteinBLASTP
928951929286336putative outer membrane lipopotein small protein AQuickGO ontologyBLASTP
9294419311021662DNA repair proteinQuickGO ontologyBLASTP
931182932060879inorganic polyphosphateATP-NAD kinaseQuickGO ontologyBLASTP
932209932796588heat shock proteinQuickGO ontologyBLASTP
9332339344651233putative manganese transport protein MntHQuickGO ontologyBLASTP
934497934700204putative tautomeraseQuickGO ontologyBLASTP
9347149358801167hypothetical proteinBLASTP
9360799371761098glycerol dehydrogenaseQuickGO ontologyBLASTP
937554938135582putative mutTNUDIX family proteinQuickGO ontologyBLASTP
9385309397951266putative sugar ABC transporter periplasmic binding proteinQuickGO ontologyBLASTP
939859940740882putative sugar ABC transporter permease proteinQuickGO ontologyBLASTP
940742941554813putative sugar ABC transporter permease proteinQuickGO ontologyBLASTP
9415919426761086putative sugar ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
9430259445481524putative exported plant proteoglycan hydrolaseQuickGO ontologyBLASTP
9446679456981032LacI-family transcriptional regulatorQuickGO ontologyBLASTP
945835946629795ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
946671947612942ABC transporter permease proteinQuickGO ontologyBLASTP
947609948505897ABC transporter periplasmic binding proteinQuickGO ontologyBLASTP
948918949769852putative beta-glucoside operon antiterminatorQuickGO ontologyBLASTP
9499159513421428beta-glucosidaseQuickGO ontologyBLASTP
9514089533421935PTS system IIabc componentQuickGO ontologyBLASTP