Pre_GI Gene

Host: NC_006177:12383 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006177:12383 Symbiobacterium thermophilum IAM 14863, complete genome

Host Lineage: Symbiobacterium thermophilum; Symbiobacterium; Shewanellaceae; Clostridiales; Firmicutes; Bacteria

General Information: This symbiotic and thermophilic bacterium was discovered by screening for thermostable tryptanophases in Japanese compost. Cultured growth of this organism requires the presence of another bacterial species, such as a Bacillus or Escherichia coli, which provides diffusable metabolites required for its growth. Pure cultures can be obtained by growing Symbiobacterium thermophilum in a bioreactor, separated from its symbiotic counterpart by a dialysis membrane. Because of its symbiotic nature, it cannot be cultured with conventional methods. Despite a negative reaction for gram stain, this species is placed with the gram-positive bacteria based on 16s phylogenetic analysis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12383136481266seryl-tRNA synthetaseQuickGO ontologyBLASTP
137611385494tRNA-SerQuickGO ontology
1392914387459putative Cu-binding proteinQuickGO ontologyBLASTP
14467161761710ABC-type dipeptideoligopeptidenickel transport systems periplasmic componentsQuickGO ontologyBLASTP
16249179611713DNA polymerase III gamma and tau subunitsQuickGO ontologyBLASTP
1796118290330hypothetical proteinBLASTP
1829718893597recombination proteinQuickGO ontologyBLASTP
19233206811449glutamyl-tRNA synthetaseQuickGO ontologyBLASTP
2114422715157216S ribosomal RNAQuickGO ontologyBLASTP
2293225880294923S ribosomal RNAQuickGO ontologyBLASTP
25926260391145S ribosomal RNAQuickGO ontologyBLASTP
260932617078tRNA-AsnQuickGO ontology
261712624979tRNA-GlyQuickGO ontology
262532633280tRNA-MetQuickGO ontologyBLASTP
264252650379tRNA-PheQuickGO ontologyBLASTP
265062659388tRNA-TyrQuickGO ontologyBLASTP
265972667579tRNA-GlyQuickGO ontology
266802675879tRNA-ValQuickGO ontologyBLASTP
268722695180tRNA-AspQuickGO ontologyBLASTP
269542704794tRNA-LeuQuickGO ontologyBLASTP
270482712780tRNA-IleQuickGO ontology
271432722179tRNA-ThrQuickGO ontology
272182731093tRNA-SerQuickGO ontology
2745328316864spermidine synthaseQuickGO ontologyBLASTP
2831329194882arginase-family proteinQuickGO ontologyBLASTP
29238309141677arginyl-tRNA synthetaseQuickGO ontologyBLASTP
30965328471883group II intronQuickGO ontologyBLASTP
31521328101290group II intron-encoding maturaseQuickGO ontologyBLASTP