Pre_GI Gene

Host: NC_006177:2943259 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006177:2943259 Symbiobacterium thermophilum IAM 14863, complete genome

Host Lineage: Symbiobacterium thermophilum; Symbiobacterium; Shewanellaceae; Clostridiales; Firmicutes; Bacteria

General Information: This symbiotic and thermophilic bacterium was discovered by screening for thermostable tryptanophases in Japanese compost. Cultured growth of this organism requires the presence of another bacterial species, such as a Bacillus or Escherichia coli, which provides diffusable metabolites required for its growth. Pure cultures can be obtained by growing Symbiobacterium thermophilum in a bioreactor, separated from its symbiotic counterpart by a dialysis membrane. Because of its symbiotic nature, it cannot be cultured with conventional methods. Despite a negative reaction for gram stain, this species is placed with the gram-positive bacteria based on 16s phylogenetic analysis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
294325929445691311homoserine dehydrogenaseQuickGO ontologyBLASTP
294465029466201971ATP-dependent helicaseQuickGO ontologyBLASTP
2946781294834315631-pyrroline-5 carboxylate dehydrogenaseQuickGO ontologyBLASTP
294843929496741236putative transporterQuickGO ontologyBLASTP
2949990295006980tRNA-ProQuickGO ontology
2950147295022680tRNA-ProQuickGO ontology
2950230295030879tRNA-AlaQuickGO ontology
2950310295038980tRNA-HisQuickGO ontology
2950395295047379tRNA-TrpQuickGO ontology
2950478295055679tRNA-ArgQuickGO ontology
2950559295063880tRNA-ArgQuickGO ontologyBLASTP
2950670295074879tRNA-ThrQuickGO ontologyBLASTP
2950751295084494tRNA-LeuQuickGO ontologyBLASTP
2950846295093287tRNA-LeuQuickGO ontology
2950977295105579tRNA-GluQuickGO ontology
2951058295113477tRNA-GlnQuickGO ontology
295124529513581145S ribosomal RNAQuickGO ontology
29513992954347294923S ribosomal RNAQuickGO ontologyBLASTP
29546332956204157216S ribosomal RNAQuickGO ontologyBLASTP
29571182957972855oligopeptide ABC transporter permease proteinQuickGO ontologyBLASTP
29579652958930966oligopeptide ABC transporter permease proteinQuickGO ontologyBLASTP
295899629606511656oligopeptide ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
29609452961715771hypothetical protein
296217529648172643hypothetical proteinBLASTP
296484529659421098iron ABC transporter substrate-binding proteinQuickGO ontologyBLASTP