Pre_GI Gene

Host: NC_006511:1506915 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006511:1506915 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
150691515080631149cyclopropane-fatty-acyl-phospholipid synthaseQuickGO ontologyBLASTP
15081051508746642riboflavin synthase subunit alphaQuickGO ontologyBLASTP
150896315103361374multidrug efflux protein NorAQuickGO ontologyBLASTP
1510488151056174tRNA-ValQuickGO ontologyBLASTP
1510575151064874tRNA-ValQuickGO ontologyBLASTP
151080915118671059putative type III secretion proteinQuickGO ontologyBLASTP
15118641512643780putative type III secretion proteinQuickGO ontologyBLASTP
15126441512910267putative type III secretion proteinQuickGO ontologyBLASTP
15129071513554648putative type III secretion proteinQuickGO ontologyBLASTP
15136221514590969type III secretion proteinQuickGO ontologyBLASTP
15145711514945375putative type III secretion proteinQuickGO ontologyBLASTP
15149261515303378putative type III secretion proteinQuickGO ontologyBLASTP
151530615166071302type III secretion system ATPaseQuickGO ontologyBLASTP
151659715186422046Secretion system apparatus homology with the LcrD family of proteinsQuickGO ontologyBLASTP
15186271518995369putative pathogenicity island proteinQuickGO ontologyBLASTP
15190531520045993putative secretion system proteinQuickGO ontologyBLASTP
15200351520709675putative pathogenicity island proteinQuickGO ontologyBLASTP
15207061521254549putative pathogenicity island proteinQuickGO ontologyBLASTP
15212721522021750putative pathogenicity island lipoproteinQuickGO ontologyBLASTP
15220181522266249putative pathogenicity island proteinQuickGO ontologyBLASTP
15222781522505228putative pathogenicity island proteinQuickGO ontologyBLASTP
15225461522761216putative pathogenicity island proteinQuickGO ontologyBLASTP
15228551523544690putative pathogenicity island effector proteinQuickGO ontologyBLASTP
15235411524323783putative pathogenicity island effector proteinQuickGO ontologyBLASTP
15243391524767429putative pathogenicity island proteinQuickGO ontologyBLASTP
15248251525241417putative pathogenicity island effector proteinQuickGO ontologyBLASTP
15252441525831588putative pathogenicity island effector proteinQuickGO ontologyBLASTP
152584715273011455putative pathogenicity island effector proteinQuickGO ontologyBLASTP
15273041527777474putative Type III secretion system chaperone proteinQuickGO ontologyBLASTP
15277741528364591putative pathogenicity island effector effector proteinQuickGO ontologyBLASTP
15283711528697327putative pathogenicity island proteinQuickGO ontologyBLASTP
15289601529202243putative secretion system proteinQuickGO ontologyBLASTP
152921015304211212putative pathogenicity island proteinQuickGO ontologyBLASTP
153040215318951494putative outer membrane secretory proteinQuickGO ontologyBLASTP
15318971532298402putative pathogenicity island secreted effector proteinQuickGO ontologyBLASTP
153269915354612763putative two-component sensor kinaseQuickGO ontologyBLASTP
15354921536130639putative two-component response regulatorQuickGO ontologyBLASTP
15363091537037729putative transcriptional regulatorQuickGO ontologyBLASTP
15372091538168960putative pathogenicity island proteinQuickGO ontologyBLASTP
15382641538476213hypothetical proteinBLASTP
15385741539194621putative two-component response regulatorQuickGO ontologyBLASTP
153916915409171749hypothetical proteinBLASTP
15411111541864754BLASTP
154186515428871023tetrathionate reductase subunit C membrane proteinQuickGO ontologyBLASTP
154288015459423063tetrathionate reductase subunit AQuickGO ontologyBLASTP