Pre_GI Gene

Host: NC_007912:231817 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007912:231817 Saccharophagus degradans 2-40, complete genome

Host Lineage: Saccharophagus degradans; Saccharophagus; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is a marine gamma-proteobacterium that was isolated from decaying Spartina alterniflora, a salt marsh cord grass, in the Chesapeake Bay, USA. Saccharophagus degradans 2-40 has been used to produce ethanol from plant material and may be useful for the production bioethanol. Bacterium able to degrade complex carbohydrates. Saccharophagus degradans is capable of degrading insoluble complex carbohydrates through the collective action of enzyme complexes found on its cell surfaces, utilizing the degradation products as a carbon source. This organism may be useful in bioremediation. The degradative enzymes this organism produces are typically exoenzymes that are collected and organized into large surface complexes termed cellulosomes.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
231817232221405Cellulose binding type IVQuickGO ontologyBLASTP
2322972343152019ATP-dependent DNA helicase RepQuickGO ontologyBLASTP
234416235009594putative competence protein ComMQuickGO ontologyBLASTP
235189235890702Urease gamma subunit regionQuickGO ontologyBLASTP
2359352377701836Urease beta subunitQuickGO ontologyBLASTP
237775238656882Urease alpha subunitQuickGO ontologyBLASTP
238778239701924hypothetical proteinBLASTP
2397062412141509hypothetical proteinBLASTP
2411742430061833Urease accessory protein UreGQuickGO ontology
243465244391927hypothetical protein
2444432455221080hypothetical protein
2462552500883834hypothetical proteinBLASTP
2505152523591845UvrDREP helicase family proteinQuickGO ontologyBLASTP
2523342543342001ATPaseQuickGO ontologyBLASTP
254370254585216ATPaseQuickGO ontology
2545752562421668hypothetical proteinBLASTP
256249256581333hypothetical protein
256578257252675hypothetical protein
257390258016627hypothetical proteinBLASTP
259070259696627hypothetical proteinBLASTP
2617042627801077hypothetical proteinBLASTP
263064263804741Diaminopimelate epimeraseQuickGO ontologyBLASTP
263804264241438Diaminopimelate decarboxylaseQuickGO ontologyBLASTP
264238264813576sigma-24 FecI-likeQuickGO ontologyBLASTP