Pre_GI Gene

Host: NC_008044 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008044:136844 Silicibacter sp. TM1040, complete genome

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
136844137569726orotidine 5-phosphate decarboxylaseQuickGO ontologyBLASTP
1378141404322619ATPase AAA-2QuickGO ontologyBLASTP
1406221421151494ferredoxin-dependent glutamate synthaseQuickGO ontologyBLASTP
142088142489402hypothetical protein
142784143686903Twin-arginine translocation pathway signalQuickGO ontologyBLASTP
143686144285600Ferric reductase-like transmembrane component-likeQuickGO ontologyBLASTP
144346144612267hypothetical protein
144962146416145516S ribosomal RNAQuickGO ontologyBLASTP
14655614663277tRNA-IleQuickGO ontology
14669814677376tRNA-AlaQuickGO ontologyBLASTP
147318150161284423S ribosomal RNAQuickGO ontologyBLASTP
1503991505131155S ribosomal RNAQuickGO ontologyBLASTP
15056515064177tRNA-MetQuickGO ontology
150726151112387response regulator receiver proteinQuickGO ontologyBLASTP
1511031522781176histidine kinaseQuickGO ontologyBLASTP
152275152919645hypothetical proteinBLASTP
152904153326423putative anti-sigma regulatory factor serinethreonine protein kinaseQuickGO ontologyBLASTP
153323153679357anti-sigma-factor antagonistQuickGO ontologyBLASTP
153682154578897anti-sigma-factor antagonistQuickGO ontologyBLASTP
1548101562341425hypothetical proteinBLASTP
156335156646312ETC complex I subunit conserved regionQuickGO ontologyBLASTP
1568431590352193excinuclease ABC B subunitQuickGO ontologyBLASTP
1590571604241368Deoxyguanosinetriphosphate triphosphohydrolaseQuickGO ontologyBLASTP
1605001615401041FAD dependent oxidoreductaseQuickGO ontologyBLASTP
161599162282684protein of unknown function DUF752QuickGO ontologyBLASTP
162286163173888protein of unknown function DUF6 transmembraneQuickGO ontologyBLASTP
1631291650961968Lytic transglycosylase catalyticQuickGO ontologyBLASTP