Pre_GI Gene

Host: NC_008044:3024125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008044:3024125 Silicibacter sp. TM1040, complete genome

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30241253024727603Smr proteinMutS2QuickGO ontologyBLASTP
302472730257851059MltAQuickGO ontologyBLASTP
30257823026438657import inner membrane translocase subunit Tim44QuickGO ontologyBLASTP
30265533027050498FxsA cytoplasmic membrane proteinQuickGO ontologyBLASTP
30271153027609495protein-export protein SecBQuickGO ontologyBLASTP
30276693028400732DNA polymerase III epsilon subunitQuickGO ontologyBLASTP
30283933028986594Dephospho-CoA kinaseQuickGO ontologyBLASTP
30289863029816831shikimate 5-dehydrogenaseQuickGO ontologyBLASTP
30298133030412600Maf-like proteinQuickGO ontologyBLASTP
30308313031286456conserved hypothetical protein 701QuickGO ontologyBLASTP
303141730326881272transcription termination factor RhoQuickGO ontologyBLASTP
303271930340051287tRNA modification GTPase TrmEQuickGO ontologyBLASTP
303400930358921884glucose inhibited division protein AQuickGO ontologyBLASTP
30358893036506618methyltransferase GidBQuickGO ontologyBLASTP
30364993037311813Cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
30373303038229900parB-like partition proteinsQuickGO ontologyBLASTP
30382193038572354protein of unknown function DUF454QuickGO ontologyBLASTP
303857630397301155Putative oxygen-independent coproporphyrinogen III oxidaseQuickGO ontologyBLASTP
30397233040337615Ham1-like proteinQuickGO ontologyBLASTP
30403343041047714ribonuclease PHQuickGO ontologyBLASTP
304118630422501065heat-inducible transcription repressor HrcAQuickGO ontologyBLASTP
30422603042823564GrpE proteinQuickGO ontologyBLASTP
304291030455492640DNA mismatch repair protein MutSQuickGO ontologyBLASTP
30456703046518849flagellin-likeQuickGO ontologyBLASTP
304684430490992256Malate dehydrogenase oxaloacetate decarboxylating NADP Phosphate acetyltransferaseQuickGO ontologyBLASTP