Pre_GI Gene

Host: NC_008148:1859888 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:1859888 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
185988818619812094hypothetical proteinBLASTP
18621191862439321hypothetical protein
18625331862802270plasmid related proteinQuickGO ontologyBLASTP
18628021863341540zinc finger SWIM-typeQuickGO ontologyBLASTP
18645791865031453Enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
186524118663231083Acetyl-CoA C-acetyltransferaseQuickGO ontologyBLASTP
18663461867217872BLASTP
18672221867398177hypothetical protein
186757318688951323Phenylacetate--CoA ligaseQuickGO ontologyBLASTP
18689091869817909hypothetical proteinBLASTP
186981918718792061Hydantoinase BoxoprolinaseQuickGO ontologyBLASTP
1871896187407621815-oxoprolinase ATP-hydrolyzingQuickGO ontologyBLASTP
18740601874431372putative subunit of acetophenone carboxylaseQuickGO ontologyBLASTP
187443318763761944HydantoinaseoxoprolinaseQuickGO ontologyBLASTP
187647118778201350Phenylacetate--CoA ligaseQuickGO ontologyBLASTP
18778411878557717GntR-like proteinQuickGO ontologyBLASTP
187878018799901211BLASTP
188015618814331278Amidase hydantoinasecarbamoylaseQuickGO ontologyBLASTP
18814361881861426Endoribonuclease L-PSPQuickGO ontologyBLASTP
18818841882603720protein of unknown function DUF1028QuickGO ontologyBLASTP
1882606188405714524-hydroxyphenylacetate 3-hydroxylaseQuickGO ontologyBLASTP
188409818852791182flavin reductase-like FMN-binding proteinQuickGO ontologyBLASTP
18858421886333492BLASTP
18867391887621883BLASTP
18876271887923297transposase IS3IS911QuickGO ontologyBLASTP
18880521888315264BLASTP
188853618899031368major facilitator superfamily MFS_1QuickGO ontologyBLASTP
18900261890243218
18903621891126765carbon monoxide dehydrogenase subunit GQuickGO ontologyBLASTP
18911431891940798short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
189199718935201524AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
18936341894335702Enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
18943611894765405Glyoxalasebleomycin resistance proteindioxygenaseQuickGO ontologyBLASTP
18947621895415654putative cyclaseQuickGO ontologyBLASTP
18955431896406864molybdopterin dehydrogenase FAD-binding proteinQuickGO ontologyBLASTP
189639618987832388Carbon-monoxide dehydrogenaseQuickGO ontologyBLASTP
189878018993555762Fe-2S-binding proteinQuickGO ontologyBLASTP
189935219016792328Carbon-monoxide dehydrogenaseQuickGO ontologyBLASTP
190172619031051380major facilitator superfamily MFS_1QuickGO ontologyBLASTP
19031651903911747transcriptional regulator GntR familyQuickGO ontologyBLASTP
190391519050751161acyl-CoA dehydrogenase-like proteinQuickGO ontologyBLASTP
190549419068851392AmidaseQuickGO ontologyBLASTP
19071301907504375hypothetical protein
19076681907991324hypothetical protein
19080571908707651hypothetical proteinBLASTP
19087041909234531hypothetical protein
19092951909576282hypothetical protein
19095471909888342hypothetical protein
19098851910115231hypothetical protein
19101051910347243hypothetical protein
19109391911280342hypothetical protein
19114101912381972PfkBQuickGO ontologyBLASTP
191246419135071044inner-membrane translocatorQuickGO ontologyBLASTP
191350919145641056periplasmic binding proteinLacI transcriptional regulatorQuickGO ontologyBLASTP
191456819160671500ABC transporter relatedQuickGO ontologyBLASTP
19160641916528465RbsD or FucU transportQuickGO ontologyBLASTP
19166001917226627signal transduction histidine kinase LytSQuickGO ontologyBLASTP
19172951918029735cobalt transport proteinQuickGO ontologyBLASTP
191802619197501725ABC transporter relatedQuickGO ontologyBLASTP
19197951920730936Inosineuridine-preferring nucleoside hydrolaseQuickGO ontologyBLASTP