Pre_GI Gene

Host: NC_008148:2498000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:2498000 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
249812024998171698methylmalonyl-CoA mutaseQuickGO ontologyBLASTP
249989725010841188acyl-CoA dehydrogenase-like proteinQuickGO ontologyBLASTP
25011392502077939hypothetical proteinBLASTP
25020792502549471hypothetical proteinBLASTP
25034162503745330BLASTP
25037642504585822transposase IS4QuickGO ontologyBLASTP
25047352504896162BLASTP
25052262505852627putative transposaseQuickGO ontologyBLASTP
25058932506216324hypothetical protein
25063152506515201hypothetical protein
25065632506814252hypothetical protein
25068472507017171
25069892507414426hypothetical protein
250759625088371242FAD dependent oxidoreductaseQuickGO ontologyBLASTP
25088572509123267sarcosine oxidase subunit DQuickGO ontologyBLASTP
250911625120492934AminomethyltransferaseQuickGO ontologyBLASTP
25120832512757675hypothetical protein
251278925141291341Glutamate--ammonia ligaseQuickGO ontologyBLASTP
25141422515059918glutamine amidotransferase class-IIQuickGO ontologyBLASTP
25150592515736678glutamate synthase alpha subunit-like proteinQuickGO ontologyBLASTP
251573925171211383ferredoxin-dependent glutamate synthaseQuickGO ontologyBLASTP
251803025191351106BLASTP
25191782519588411BLASTP
25196572520133477
25203262520988663transcriptional regulator XRE family with cupin sensorQuickGO ontologyBLASTP
25211012521577477transposase IS4QuickGO ontologyBLASTP
25215952521972378Transposase and inactivated derivatives-like proteinQuickGO ontologyBLASTP
25220442522427384hypothetical protein
252274125253382598Hemolysin-type calcium-binding regionQuickGO ontologyBLASTP
252611725280391923multi-sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
25280292528718690two component transcriptional regulator LuxR familyQuickGO ontologyBLASTP
25287322529217486hypothetical protein
25292992529685387putative transposaseQuickGO ontologyBLASTP
25297032530080378putative transposaseQuickGO ontologyBLASTP
25301522530433282hypothetical proteinBLASTP
25305102530719210BLASTP
25309542531910957Methylenetetrahydrofolate dehydrogenase NADPQuickGO ontologyBLASTP
25319202532501582Formiminotransferase-cyclodeaminaseQuickGO ontologyBLASTP
253249825342191722Formate--tetrahydrofolate ligaseQuickGO ontologyBLASTP
25343122534983672hypothetical protein
25352032535631429UspAQuickGO ontologyBLASTP
253562825370791452amino acid permease-associated regionQuickGO ontologyBLASTP
25372552537680426hypothetical protein
25376832537973291hypothetical protein
253839325394701078BLASTP
25396402540078439BLASTP
25404462541068623BLASTP
25411422541963822transposase IS4QuickGO ontologyBLASTP
254233725471934857NAD-glutamate dehydrogenaseQuickGO ontologyBLASTP
254719025483651176Acetyl-CoA C-acetyltransferaseQuickGO ontologyBLASTP
254849625501091614AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
25500992550851753periplasmic binding proteinQuickGO ontologyBLASTP