Pre_GI Gene

Host: NC_008149:2802392 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008149:2802392 Yersinia pestis Nepal516, complete genome

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
280239228058143423membrane proteinQuickGO ontologyBLASTP
280581128070431233hypothetical proteinBLASTP
28078732808046174IS630 ORFQuickGO ontologyBLASTP
28081552808475321transposaseQuickGO ontologyBLASTP
28086062808743138transposaseQuickGO ontologyBLASTP
28092082809678471hypothetical proteinBLASTP
280985128120342184hypothetical proteinBLASTP
28120502812310261hypothetical proteinBLASTP
28124642813237774hypothetical proteinBLASTP
281323428154652232hypothetical proteinBLASTP
281555028178982349hypothetical proteinBLASTP
281790128205432643ATPase subunit of ATP-dependent proteaseQuickGO ontologyBLASTP
28209312821422492hypothetical proteinBLASTP
282142628231621737OmpA-family membrane proteinQuickGO ontologyBLASTP
28231622823848687membrane proteinQuickGO ontologyBLASTP
282384528251971353hypothetical proteinBLASTP
282520928267471539hypothetical proteinBLASTP
28267962827296501hypothetical proteinBLASTP
28282852829133849acyl transferaseQuickGO ontologyBLASTP
28292322829480249acyl carrier proteinQuickGO ontologyBLASTP
28295182830006489hypothetical proteinBLASTP
28300452830833789short-chain dehydrogenaseQuickGO ontologyBLASTP
28308362831612777enoyl-CoA hydrataseQuickGO ontologyBLASTP
28315902832309720enoyl-CoA hydrataseQuickGO ontologyBLASTP
283230228335401239hydroxymethylglutaryl-coenzyme A synthaseQuickGO ontologyBLASTP
28335562834302747beta-ketoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
283429528355781284beta-ketoacyl-acyl-carrier-protein synthaseQuickGO ontologyBLASTP
28355682836092525putative 3R-hydroxymyristoyl-acyl-carrier-protein dehydraseQuickGO ontologyBLASTP
28363562836676321hypothetical proteinBLASTP
28373052838051747short-chain dehydrogenaseQuickGO ontologyBLASTP
283820528406222418oxidoreductaseQuickGO ontologyBLASTP
28410562842036981hypothetical proteinBLASTP
28422222842500279hypothetical proteinBLASTP
28425072842869363hypothetical proteinBLASTP
28432332843520288transposaseQuickGO ontologyBLASTP
28442682844597330sulfite reductase subunit proteinQuickGO ontologyBLASTP
28446492844927279acylphosphataseQuickGO ontologyBLASTP
284502128462111191hypothetical proteinBLASTP
28462722846589318hypothetical proteinBLASTP
28466982847114417hypothetical proteinBLASTP
28474302848110681hypothetical proteinBLASTP
28482892848753465methylglyoxal synthaseQuickGO ontologyBLASTP
284881428508682055helicase IVQuickGO ontologyBLASTP
28510622851508447membrane proteinQuickGO ontologyBLASTP
285153828536762139membrane proteinQuickGO ontologyBLASTP