Pre_GI Gene

Host: NC_008228:2450700 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:2450700 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
24507002451218519beta-hydroxyacyl-acyl-carrier-protein dehydratase FabAQuickGO ontologyBLASTP
24513532451622270hypothetical protein
24519202452396477SEC-C motif containing proteinQuickGO ontologyBLASTP
24526052452988384hypothetical protein
24530562453703648Ferric reductase-like transmembrane component-likeQuickGO ontologyBLASTP
24537032454701999oxidoreductase molybdopterin bindingQuickGO ontologyBLASTP
245478924561921404putative deoxyguanosinetriphosphate triphosphohydrolaseQuickGO ontologyBLASTP
24562132457040828hypothetical proteinBLASTP
24571702457604435putative phosphohydrolaseQuickGO ontologyBLASTP
24578362458087252transcriptional regulator XRE familyQuickGO ontologyBLASTP
24589672459800834metal dependent phosphohydrolaseQuickGO ontologyBLASTP
246018724614401254hypothetical proteinBLASTP
246144324625611119hypothetical protein
246255424645061953phage integraseQuickGO ontologyBLASTP
246450624663351830hypothetical proteinBLASTP
24672002467589390transcriptional regulator MerR familyQuickGO ontologyBLASTP
24676712468306636cation efflux proteinQuickGO ontologyBLASTP
24683032468662360hypothetical proteinBLASTP
24686552469539885cation diffusion facilitator family transporterQuickGO ontologyBLASTP