Pre_GI Gene

Host: NC_008261:2157713 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008261:2157713 Clostridium perfringens ATCC 13124, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
215771321591431431adenylosuccinate lyaseQuickGO ontologyBLASTP
21593862159646261phosphocarrier HPr familyQuickGO ontologyBLASTP
215974121609341194aspartate aminotransferaseQuickGO ontologyBLASTP
21610872161347261stage V sporulation protein SQuickGO ontologyBLASTP
216156521631001536HDIGKH domain proteinQuickGO ontologyBLASTP
216344821645061059recA proteinQuickGO ontologyBLASTP
21646422165232591CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseQuickGO ontologyBLASTP
216521621665321317MiaB-like tRNA modifying enzyme YliG TIGR01125QuickGO ontologyBLASTP
216662221690122391DNA translocase FtsKQuickGO ontologyBLASTP
21691442169833690clp proteaseQuickGO ontologyBLASTP
216988721710831197aspartokinaseQuickGO ontologyBLASTP
21710972171372276PRC-barrel domain proteinQuickGO ontologyBLASTP
217150721736152109polyribonucleotide nucleotidyltransferaseQuickGO ontologyBLASTP
21737072173970264ribosomal protein S15QuickGO ontologyBLASTP
21740862175015930riboflavin biosynthesis protein RibFQuickGO ontologyBLASTP
21750192175903885tRNA pseudouridine synthase BQuickGO ontologyBLASTP