Pre_GI Gene

Host: NC_008262:381323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008262:381323 Clostridium perfringens SM101, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
381323382297975probable ABC exporter accessory factor for bacteriocin putativeQuickGO ontologyBLASTP
3823233833751053IS1470 transposaseQuickGO ontologyBLASTP
383974384552579membrane proteinQuickGO ontologyBLASTP
384593384880288hypothetical protein
3854343867381305hypothetical proteinBLASTP
3870103883951386tldD protein truncatedQuickGO ontologyBLASTP
3884113897601350TldDPmbA family proteinQuickGO ontologyBLASTP
3900693916551587hypothetical proteinBLASTP
3917763939412166ATP-dependent DNA helicase RecQQuickGO ontologyBLASTP
3945703973892820excinuclease ABC A subunitQuickGO ontologyBLASTP
397724398158435FHA domain proteinQuickGO ontologyBLASTP
3981723994011230cell cycle protein FtsWRodASpoVE familyQuickGO ontologyBLASTP
3994024008651464Penicillin binding protein transpeptidase domain proteinQuickGO ontologyBLASTP
4009754028371863excinuclease ABC C subunitQuickGO ontologyBLASTP
402987403901915UDP-N-acetylenolpyruvoylglucosamine reductaseQuickGO ontologyBLASTP