Pre_GI Gene

Host: NC_008269 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008269:868000 Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
868530869036507hypothetical protein
869103869897795probable transcriptional regulator GntR familyQuickGO ontologyBLASTP
870320870772453possible transposaseQuickGO ontologyBLASTP
871146871730585probable transposaseQuickGO ontologyBLASTP
872176872952777hypothetical protein
873325873912588transcriptional regulator TetR familyQuickGO ontologyBLASTP
873942874358417hypothetical protein
874361874645285hypothetical protein
875184875957774transcriptional regulator IclR familyQuickGO ontologyBLASTP
875928876284357hypothetical proteinBLASTP
876378876992615transcriptional regulator TetR familyQuickGO ontologyBLASTP
876989877369381hypothetical protein
8776588788871230possible sulfide-quinone reductaseQuickGO ontologyBLASTP
878939879259321hypothetical protein
879771880301531hypothetical proteinBLASTP
880376880624249hypothetical protein
880690881166477hypothetical protein
8818418830671227probable flavin reductase NADHflavin oxidoreductaseQuickGO ontologyBLASTP
8835868851091524aldehyde dehydrogenase NADQuickGO ontologyBLASTP
885109885651543hypothetical proteinBLASTP
8859328875721641propionyl-CoA carboxylase beta subunitQuickGO ontologyBLASTP
887569887868300hypothetical protein
8878958896761782biotin carboxylaseQuickGO ontologyBLASTP
890018890347330hypothetical proteinBLASTP
8909188928341917acetyl-CoA synthetaseQuickGO ontologyBLASTP
893889894068180possible 4-oxalocrotonate tautomeraseQuickGO ontologyBLASTP
894212894757546hypothetical protein
894988895455468probable transcriptional regulatorQuickGO ontologyBLASTP
895771896145375hypothetical protein
8966908978861197malate dehydrogenase oxaloacetate decarboxylatingQuickGO ontologyBLASTP
899326899577252hypothetical protein
899747900271525hypothetical proteinBLASTP
900327900974648hypothetical proteinBLASTP
900974901678705possible transmembrane proteinQuickGO ontologyBLASTP
901730902263534hypothetical proteinBLASTP
902273902824552hypothetical proteinBLASTP
902923903378456hypothetical proteinBLASTP
903479903892414hypothetical proteinBLASTP
903911904267357hypothetical protein
9046279058561230possible sulfide-quinone reductaseQuickGO ontologyBLASTP
906044906751708hypothetical protein
907442907687246hypothetical protein
907771908301531hypothetical proteinBLASTP
9086909101381449probable metabolite transporter MFS superfamilyQuickGO ontologyBLASTP
910140910391252hypothetical protein