Pre_GI Gene

Host: NC_008278:6279553 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008278:6279553 Frankia alni ACN14a, complete genome

Host Lineage: Frankia alni; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from a green alder (Alnus crispa) growing in Tadoussac, Canada. These bacteria were originally linked to fungi, because of the mycelium-like filaments many of them form. This bacterium is able to establish a nitrogen-fixing symbiosis with alder (Alnus spp.) and myrtle (Myrica spp.), two pioneer plant genera of temperate regions, found on forest clearings, mine wastes, sand dunes and glacial moraines where nitrogen is the limiting factor. Frankia alni causes root hair deformation: it penetrates the cortical cells and induces the formation of nodules which resemble those induced by Rhizobium in legumes. These nodules are then colonized by vegetative hyphae (mycelium filaments) which differentiate into diazo-vesicles


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
627955362808211269Cell division protein FtsYQuickGO ontologyBLASTP
628089162846403750Chromosome partition protein smcQuickGO ontologyBLASTP
62851566285353198hypothetical protein
62855676285884318putative acylphosphatase Acylphosphate phosphohydrolaseQuickGO ontology
62860176286253237hypothetical protein putative signal peptideQuickGO ontology
62862716287068798hypothetical protein putative aromatic acid decarboxylaseQuickGO ontology
62871316287364234hypothetical protein
62872416288206966formamidopyrimidine DNA glycosylase also acts on 5-formyluracil and 5-hydroxymethyluracilQuickGO ontologyBLASTP
62881406288298159hypothetical protein
62883046289122819Ribonuclease III RNase IIIQuickGO ontologyBLASTP
628911962901921074hypothetical protein putative Fatty acidphospholipid synthesis proteinQuickGO ontologyBLASTP
62903696290845477hypothetical proteinBLASTP
62913306291818489CMP-deoxy-D-manno-octulosonate-lipid A transferase phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
62918156292387573putative RNA methylase putative putative SAM-dependent methyltransferase domainQuickGO ontologyBLASTP
629238462945612178ATP-dependent DNA helicase recGQuickGO ontologyBLASTP
6294770629496719850S ribosomal protein L28-1QuickGO ontologyBLASTP
629497462963831410hypothetical proteinBLASTP
629648862975911104D-alanine-D-alanine ligase AQuickGO ontologyBLASTP
62976396297971333hypothetical protein
62979796298383405hypothetical protein putative signal peptideQuickGO ontology
62984826298715234hypothetical proteinBLASTP
62987946298967174hypothetical protein
62989456299820876bifunctional hydroxy-methylpyrimidine kinase HMP kinase hydroxy-phosphomethylpyrimidine kinase HMP-P kinaseQuickGO ontologyBLASTP
629992263014241503UDP-N-acetylglucosamine 1-carboxyvinyltransferase Enoylpyruvate transferase UDP-N-acetylglucosamine enolpyruvyl transferase EPTQuickGO ontologyBLASTP
63013726302367996glycerol-3-phosphate dehydrogenase NADQuickGO ontologyBLASTP