Pre_GI Gene

Host: NC_009092 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009092:179226 Shewanella loihica PV-4, complete genome

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
179226179537312ribosomal protein S10QuickGO ontologyBLASTP
179565180203639ribosomal protein L3QuickGO ontologyBLASTP
180220180825606ribosomal protein L4L1eQuickGO ontologyBLASTP
180822181121300Ribosomal protein L25L23QuickGO ontologyBLASTP
181138181965828ribosomal protein L2QuickGO ontologyBLASTP
181977182255279ribosomal protein S19QuickGO ontologyBLASTP
182271182603333ribosomal protein L22QuickGO ontologyBLASTP
182613183302690ribosomal protein S3QuickGO ontologyBLASTP
183314183724411ribosomal protein L16QuickGO ontologyBLASTP
183724183915192ribosomal protein L29QuickGO ontologyBLASTP
183915184163249ribosomal protein S17QuickGO ontologyBLASTP
184343184711369ribosomal protein L14QuickGO ontologyBLASTP
184723185037315ribosomal protein L24QuickGO ontologyBLASTP
185050185589540ribosomal protein L5QuickGO ontologyBLASTP
185600185905306ribosomal protein S14QuickGO ontologyBLASTP
185929186321393ribosomal protein S8QuickGO ontologyBLASTP
186332186862531ribosomal protein L6QuickGO ontologyBLASTP
186873187223351ribosomal protein L18QuickGO ontologyBLASTP
187237187740504ribosomal protein S5QuickGO ontologyBLASTP
187746187928183ribosomal protein L30QuickGO ontologyBLASTP
187932188366435ribosomal protein L15QuickGO ontologyBLASTP
1883741897141341preprotein translocase SecY subunitQuickGO ontologyBLASTP
189736189849114ribosomal protein L36QuickGO ontologyBLASTP
189967190323357ribosomal protein S13QuickGO ontologyBLASTP
190341190733393ribosomal protein S11QuickGO ontologyBLASTP
190770191390621ribosomal protein S4QuickGO ontologyBLASTP
191415192404990DNA-directed RNA polymerase alpha subunitQuickGO ontologyBLASTP
192444192836393ribosomal protein L17QuickGO ontologyBLASTP
192893193870978hypothetical proteinBLASTP
194005194490486CcmECycJ proteinQuickGO ontologyBLASTP
194487194687201Heme exporter protein D CcmDQuickGO ontologyBLASTP
194687195433747heme exporter protein CcmCQuickGO ontologyBLASTP
195435196121687heme exporter protein CcmBQuickGO ontologyBLASTP
196133196783651heme exporter protein CcmAQuickGO ontologyBLASTP
197116197409294cytochrome c class IQuickGO ontologyBLASTP
1976011988511251TPR repeat-containing proteinQuickGO ontologyBLASTP
1992632012391977cytochrome c-type biogenesis protein CcmFQuickGO ontologyBLASTP
201257201814558periplasmic protein thiol--disulphide oxidoreductase DsbEQuickGO ontologyBLASTP
201814202293480cytochrome C biogenesis proteinQuickGO ontologyBLASTP
202290202877588Redoxin domain proteinQuickGO ontologyBLASTP