Pre_GI Gene

Host: NC_009512:1518113 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:1518113 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
151811315199451833ABC transporter relatedQuickGO ontologyBLASTP
15200081520565558peptidyl-prolyl cis-trans isomerase cyclophilin typeQuickGO ontologyBLASTP
15205591521371813alphabeta hydrolase foldQuickGO ontologyBLASTP
15213851522308924transcriptional regulator LysR familyQuickGO ontologyBLASTP
15223571522671315hypothetical protein
15227681523382615NADPH dehydrogenase quinoneQuickGO ontologyBLASTP
15236381524513876carboxylateamino acidamine transporterQuickGO ontologyBLASTP
15245561524735180BLASTP
15258531526836984transposase IS4 family proteinQuickGO ontologyBLASTP
15269441527189246BLASTP
15275551527914360Cupin 2 conserved barrel domain proteinQuickGO ontologyBLASTP
152805715289478916-phosphogluconate dehydrogenase NAD-bindingQuickGO ontologyBLASTP
152895015300411092protein of unknown function DUF453QuickGO ontologyBLASTP
153004315307597174-carboxy-4-hydroxy-2-oxoadipate aldolaseoxaloacetate decarboxylaseQuickGO ontologyBLASTP
15307561531493738LmbE family proteinQuickGO ontologyBLASTP
153152115327471227outer membrane porinQuickGO ontologyBLASTP
153281715341331317sodiumdicarboxylate symporterQuickGO ontologyBLASTP
15341871535050864amidohydrolase 2QuickGO ontologyBLASTP
15351631536041879transcriptional regulator LysR familyQuickGO ontologyBLASTP
15362471536885639Dimethylmenaquinone methyltransferaseQuickGO ontologyBLASTP
15369131537887975D-isomer specific 2-hydroxyacid dehydrogenase NAD-bindingQuickGO ontologyBLASTP
153789815392381341major facilitator superfamily MFS_1QuickGO ontologyBLASTP
153940815409461539Transcriptional regulator IclR-like proteinQuickGO ontologyBLASTP
15414601542251792hypothetical proteinBLASTP
15427121543002291hypothetical proteinBLASTP
15434611543673213transposase IS3IS911 family proteinQuickGO ontologyBLASTP
154370615449021197transposase mutator typeQuickGO ontologyBLASTP
15455481545790243hypothetical proteinBLASTP
15458871546156270hypothetical proteinBLASTP
154650915478101302MscS Mechanosensitive ion channelQuickGO ontologyBLASTP
154791415492751362DEADDEAH box helicase domain proteinQuickGO ontologyBLASTP
15493471549619273hypothetical protein
15498351550113279protein of unknown function DUF497QuickGO ontologyBLASTP
15500911550345255hypothetical proteinBLASTP
15504221550817396hypothetical proteinBLASTP
15509231551849927protein of unknown function DUF6 transmembraneQuickGO ontologyBLASTP
155194915531211173protein of unknown function DUF1228QuickGO ontologyBLASTP
15532281554121894transcriptional regulator LysR familyQuickGO ontologyBLASTP
15542461554374129hypothetical protein
155450115558801380Nasolute symporterQuickGO ontologyBLASTP