Pre_GI Gene

Host: NC_010001:434803 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010001:434803 Clostridium phytofermentans ISDg, complete genome

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4348034372142412FG-GAP repeat proteinQuickGO ontologyBLASTP
437841438587747membrane protein-like proteinQuickGO ontologyBLASTP
438772439278507hypothetical proteinBLASTP
439293439724432protein of unknown function UPF0079QuickGO ontologyBLASTP
439847440572726peptidase M22 glycoproteaseQuickGO ontologyBLASTP
440559440993435ribosomal-protein-alanine acetyltransferaseQuickGO ontologyBLASTP
441107441349243hypothetical proteinBLASTP
441620442534915ribonuclease ZQuickGO ontologyBLASTP
442647443312666hypothetical proteinBLASTP
4434914445521062metalloendopeptidase glycoprotease familyQuickGO ontologyBLASTP
4446244453257022-C-methyl-D-erythritol 4-phosphate cytidylyltransferaseQuickGO ontologyBLASTP
44542644551186tRNA-SerQuickGO ontology
44560644569489tRNA-SerQuickGO ontologyBLASTP
446242447765152416S ribosomal RNAQuickGO ontologyBLASTP
4478514479671175S ribosomal RNAQuickGO ontologyBLASTP
44797344804573tRNA-AlaQuickGO ontologyBLASTP
448333451232290023S ribosomal RNAQuickGO ontologyBLASTP
45130145137272tRNA-AsnQuickGO ontology
45145445152572tRNA-GluQuickGO ontologyBLASTP
45164545171773tRNA-ThrQuickGO ontologyBLASTP
45174645182277tRNA-MetQuickGO ontology
45186845194174tRNA-AspQuickGO ontology
45201745208973tRNA-ValQuickGO ontologyBLASTP
45210745219286tRNA-LeuQuickGO ontologyBLASTP
45224145231474tRNA-ArgQuickGO ontologyBLASTP
452927453502576hypothetical protein
453674454273600protein of unknown function DUF340 membraneQuickGO ontologyBLASTP
454276454560285hypothetical protein
4556334574051773hypothetical proteinBLASTP
457661458350690two component transcriptional regulator winged helix familyQuickGO ontologyBLASTP
458494459414921ABC transporter relatedQuickGO ontologyBLASTP
459407460231825hypothetical protein
460345461238894histidine kinaseQuickGO ontologyBLASTP
4615694631221554ABC transporter relatedQuickGO ontologyBLASTP
463437463946510hypothetical protein
464091464651561GPR1FUN34yaaH family proteinQuickGO ontologyBLASTP