Pre_GI Gene

Host: NC_010322:1817598 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:1817598 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
181759818199882391PASPAC sensor-containing diguanylate cyclaseQuickGO ontologyBLASTP
182005818215151458D-alanyl-D-alanine carboxypeptidaseD-alanyl-D-alanine-endopeptidaseQuickGO ontologyBLASTP
18217151822059345hypothetical proteinBLASTP
182210118234471347histidine kinaseQuickGO ontologyBLASTP
18239521824230279transposase IS3IS911 family proteinQuickGO ontologyBLASTP
18242211825102882integrase catalytic subunitQuickGO ontologyBLASTP
182530618268171512heat shock proteinQuickGO ontologyBLASTP
182686118281501290beta-lactamase domain-containing proteinQuickGO ontologyBLASTP
18282551828773519group II intron maturase-specific domain-containing proteinQuickGO ontologyBLASTP
183034418317621419radical SAM domain-containing proteinQuickGO ontologyBLASTP
18331241833405282XRE family transcriptional regulatorQuickGO ontologyBLASTP
18335851833971387hypothetical proteinBLASTP
18339921834654663hypothetical proteinBLASTP
18346681835168501hypothetical proteinBLASTP
18354881835775288hypothetical protein
18360881836756669hypothetical proteinBLASTP
183675318378531101hypothetical proteinBLASTP
18380191838225207hypothetical proteinBLASTP
18385501838711162transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
183910518411592055hypothetical proteinBLASTP
18415241842123600hypothetical proteinBLASTP
18429161843548633prophage PSPPH06 putative reverse transcriptasematuraseQuickGO ontologyBLASTP
184558518465981014hypothetical proteinBLASTP
18468461847262417hypothetical proteinBLASTP
184766718491031437RNA-directed DNA polymeraseQuickGO ontologyBLASTP
18505831850867285hypothetical proteinBLASTP
18509161851860945restriction endonuclease-like proteinQuickGO ontologyBLASTP
185256118539401380integrase family proteinQuickGO ontologyBLASTP
18539371854461525hypothetical protein
185446118567132253hypothetical proteinBLASTP
185670618589672262hypothetical proteinBLASTP
185925818616482391putative PASPAC sensor proteinQuickGO ontologyBLASTP
18616571862274618two component LuxR family transcriptional regulatorQuickGO ontologyBLASTP
186255818639431386deoxyguanosinetriphosphate triphosphohydrolase-like proteinQuickGO ontologyBLASTP
18639711864300330hypothetical protein
18642971864671375hypothetical proteinBLASTP
18646811864995315hypothetical proteinBLASTP
186530918665171209Rh family proteinammonium transporterQuickGO ontologyBLASTP
18665911866830240glutaredoxinQuickGO ontologyBLASTP
18669381867369432peptidase M15AQuickGO ontologyBLASTP
18674351867743309hypothetical proteinBLASTP
18677951868679885pseudouridine synthaseQuickGO ontologyBLASTP