Pre_GI Gene

Host: NC_010407:151599 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:151599 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
151599152354756ribonuclease HQuickGO ontologyBLASTP
1525291535511023LacI family transcriptional regulatorQuickGO ontologyBLASTP
1537391554271689ribulokinaseQuickGO ontologyBLASTP
155424156134711L-ribulose-5-phosphate 4-epimeraseQuickGO ontologyBLASTP
1561311576481518L-arabinose isomeraseQuickGO ontologyBLASTP
1577231588411119putative extracellular sugar-binding proteinQuickGO ontologyBLASTP
1590211605501530putative sugar-transport ATP binding proteinQuickGO ontologyBLASTP
1605561617431188putative sugar transport permeaseQuickGO ontologyBLASTP
161880162566687putative transport proteinQuickGO ontology
162879163166288hypothetical protein
163552164151600putative DNA-binding proteinQuickGO ontology
164242165204963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP
1653021664951194xylose isomeraseQuickGO ontologyBLASTP
1667031682081506putative beta-glucosidaseQuickGO ontologyBLASTP
168205168771567putative ribosomal-protein-alanine acetyltransferaseQuickGO ontologyBLASTP
168819169256438putative MarR-familiy transcriptional regulatorQuickGO ontologyBLASTP
169392170348957LysR family transcriptional regulatorQuickGO ontologyBLASTP
1704301715211092hypothetical proteinBLASTP
1716071729201314putative membrane transport proteinQuickGO ontologyBLASTP
1730301740401011putative integral membrane proteinQuickGO ontology
174037174942906putative aminoglycoside phosphotransferaseQuickGO ontologyBLASTP
174939175589651putative integral membrane proteinQuickGO ontology