Pre_GI Gene

Host: NC_010407:410918 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:410918 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
410016410921906putative integral membrane transport proteinQuickGO ontologyBLASTP
4125254139671443hypothetical proteinBLASTP
4139694152041236putative dehydrogenaseQuickGO ontologyBLASTP
4152014163251125hypothetical proteinBLASTP
416514417428915putative integral membrane phophoesteraseQuickGO ontologyBLASTP
417755418165411putative secreted proteinQuickGO ontology
418256418678423hypothetical proteinBLASTP
418697418828132hypothetical protein
419042419971930hypothetical proteinBLASTP
420078421010933putative ATP-binding proteinQuickGO ontologyBLASTP
421019421918900putative bacteriophage proteinQuickGO ontologyBLASTP
4220304230941065putative monooxygenaseQuickGO ontologyBLASTP
423174423329156hypothetical protein
423399423743345hypothetical proteinBLASTP
423740423895156hypothetical protein
423966424541576TetR family transcriptional regulatorQuickGO ontologyBLASTP
4246394257601122putative dehydrogenaseQuickGO ontologyBLASTP
425858426820963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP
426839427600762hypothetical protein
427900428145246
428188429036849hypothetical protein
429146429751606putative oxidoreductaseQuickGO ontologyBLASTP
429865430272408putative integral membrane proteinQuickGO ontology
4305044319521449putative beta-lactamaseQuickGO ontologyBLASTP
4319704333131344putative phosphataseQuickGO ontologyBLASTP
4333924352721881putative secreted amidaseQuickGO ontologyBLASTP