Pre_GI Gene

Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:2085241 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
208524120870071767succinate dehydrogenase flavoprotein subunitQuickGO ontologyBLASTP
20870072087354348succinate dehydrogenase cytochrome b556 small membrane subunitQuickGO ontologyBLASTP
20873482087737390succinate dehydrogenase cytochrome b556 large membrane subunitQuickGO ontologyBLASTP
20881462088391246hypothetical proteinBLASTP
208849220897751284type II citrate synthaseQuickGO ontologyBLASTP
208991220909581047hypothetical proteinBLASTP
20910132091804792endonuclease VIIIQuickGO ontologyBLASTP
20918532091990138hypothetical proteinBLASTP
209205820940071950glycosyl transferase family proteinQuickGO ontologyBLASTP
20940112094844834hypothetical proteinBLASTP
209503720968151779glycosyltransferaseQuickGO ontologyBLASTP
20969092097619711polysaccharide export ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
20976232098393771polysaccharide export ABC transporter permeaseQuickGO ontologyBLASTP
209852220996551134galactosyltransferaseQuickGO ontologyBLASTP
210056021017381179UDP-galactopyranose mutaseQuickGO ontologyBLASTP
21019972102737741hypothetical proteinBLASTP
21027472103073327BLASTP
21035332104099567DNA recombinaseQuickGO ontologyBLASTP
21041592104290132hypothetical proteinBLASTP
21046132105347735LamBYcsF family proteinQuickGO ontologyBLASTP
21053372106269933hypothetical proteinBLASTP
21062632106919657hypothetical proteinBLASTP
21069352107678744hydrolase-oxidaseQuickGO ontologyBLASTP
210800721094881482PTR2-family transport proteinQuickGO ontologyBLASTP
210952721109481422deoxyribodipyrimidine photolyaseQuickGO ontologyBLASTP
21110592111265207hypothetical proteinBLASTP
21114942111691198hypothetical proteinBLASTP
211169121133701680potassium-transporting ATPase subunit AQuickGO ontologyBLASTP