Pre_GI Gene

Host: NC_011147:1502096 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1502096 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
150209615032441149cyclopropane-fatty-acyl-phospholipid synthaseQuickGO ontologyBLASTP
15032861503927642riboflavin synthase subunit alphaQuickGO ontologyBLASTP
150414415055171374multidrug efflux proteinQuickGO ontologyBLASTP
150599015070481059secretion system apparatus protein SsaUQuickGO ontologyBLASTP
15070451507824780type III secretion proteinQuickGO ontologyBLASTP
15078251508091267type III secretion proteinQuickGO ontologyBLASTP
15080881508735648type III secretion system proteinQuickGO ontologyBLASTP
15088031509771969type III secretion system proteinQuickGO ontologyBLASTP
15097521510126375type III secretion proteinQuickGO ontologyBLASTP
15101071510484378type III secretion proteinQuickGO ontologyBLASTP
151048715117881302type III secretion system ATPaseQuickGO ontologyBLASTP
151177815138232046secretion system apparatus protein SsaVQuickGO ontologyBLASTP
15138081514176369pathogenicity island proteinQuickGO ontologyBLASTP
15142341515226993secretion system proteinQuickGO ontologyBLASTP
15152161515890675pathogenicity island proteinQuickGO ontologyBLASTP
15158871516435549pathogenicity island proteinQuickGO ontologyBLASTP
15164531517202750pathogenicity island lipoproteinQuickGO ontologyBLASTP
15171991517447249pathogenicity island proteinQuickGO ontologyBLASTP
15174591517686228pathogenicity island proteinQuickGO ontologyBLASTP
15177271517942216pathogenicity island proteinQuickGO ontologyBLASTP
15180361518725690pathogenicity island effector proteinQuickGO ontologyBLASTP
15187221519504783pathogenicity island effector proteinQuickGO ontologyBLASTP
15195201519948429pathogenicity island proteinQuickGO ontologyBLASTP
15200061520422417pathogenicity island effector proteinQuickGO ontologyBLASTP
15204251521012588pathogenicity island effector proteinQuickGO ontologyBLASTP
152102815224821455pathogenicity island effector proteinQuickGO ontologyBLASTP
15224851522958474type III secretion system chaperone proteinQuickGO ontologyBLASTP
15229551523545591pathogenicity island effector proteinQuickGO ontologyBLASTP
15235521523878327pathogenicity island proteinQuickGO ontologyBLASTP
15241411524383243secretion system proteinQuickGO ontologyBLASTP
152439115256021212pathogenicity island proteinQuickGO ontologyBLASTP
152558315270761494outer membrane secretory proteinQuickGO ontologyBLASTP
15270781527479402pathogenicity island secreted effector proteinQuickGO ontologyBLASTP
152788015306422763two-component sensor kinaseQuickGO ontologyBLASTP
15306731531311639two-component response regulatorQuickGO ontologyBLASTP
15314901532218729transcriptional regulatorQuickGO ontologyBLASTP
15323901533349960pathogenicity island proteinQuickGO ontologyBLASTP
15334451533657213hypothetical proteinBLASTP
15337551534375621two-component response regulatorQuickGO ontologyBLASTP
153435015361281779hypothetical proteinBLASTP
153704615380681023tetrathionate reductase subunit CQuickGO ontologyBLASTP
153806115411233063tetrathionate reductase subunit AQuickGO ontologyBLASTP