Pre_GI Gene

Host: NC_012917:3684840 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:3684840 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
36848403685331492hypothetical proteinBLASTP
36853243685908585filamentation induced by cAMP protein FicQuickGO ontologyBLASTP
368608936884162328phageplasmid primase P4 familyQuickGO ontologyBLASTP
36884273688768342hypothetical proteinBLASTP
36887653689031267hypothetical proteinBLASTP
36890283689222195hypothetical proteinBLASTP
36892153689756542BLASTP
36897653689989225hypothetical proteinBLASTP
36899863690246261phage transcriptional regulator AlpAQuickGO ontologyBLASTP
36908083691569762hypothetical proteinBLASTP
36915663691814249transcriptional activator OgrdeltaQuickGO ontologyBLASTP
36919333692067135BLASTP
369207536938471773hypothetical proteinBLASTP
369383536949501116hypothetical proteinBLASTP
369512636962891164integrase family proteinQuickGO ontologyBLASTP
3696452369652776tRNA-ThrQuickGO ontologyBLASTP
36970543697527474hypothetical proteinBLASTP
369782736990801254gamma-glutamyl phosphate reductaseQuickGO ontologyBLASTP
369909137001941104glutamate 5-kinaseQuickGO ontologyBLASTP
37003183700692375transcriptional regulator CrlQuickGO ontologyBLASTP
370076237028882127AnkyrinQuickGO ontologyBLASTP
370290037049362037AnkyrinQuickGO ontologyBLASTP
370500337062531251hypothetical proteinBLASTP
37064693706927459Xanthine phosphoribosyltransferaseQuickGO ontologyBLASTP
370725837087181461aminoacyl-histidine dipeptidaseQuickGO ontologyBLASTP