Pre_GI Gene

Host: NC_012917:4646491 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:4646491 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
464649146475671077peptidase S58 DmpAQuickGO ontologyBLASTP
46475944648415822peptidase M55 D-aminopeptidaseQuickGO ontologyBLASTP
46484754649422948peptidase T2 asparaginase 2QuickGO ontologyBLASTP
46496274650535909transcriptional regulator LysR familyQuickGO ontologyBLASTP
46506274651490864YicC domain proteinQuickGO ontologyBLASTP
46519854652629645hypothetical protein
46527354652989255hypothetical protein
46530374653615579prophage antirepressorQuickGO ontologyBLASTP
46537734654090318transcriptional regulator XRE familyQuickGO ontologyBLASTP
46541064654363258putative transcriptional regulator NlpQuickGO ontologyBLASTP
46544614654796336transcriptional regulator XRE familyQuickGO ontologyBLASTP
46549364655481546HNH nucleaseQuickGO ontology
46557574655978222prevent-host-death family proteinQuickGO ontologyBLASTP
46559754656358384death-on-curing family proteinQuickGO ontologyBLASTP
46565214657078558putative lipoproteinQuickGO ontologyBLASTP
46571264657671546putative lipoproteinQuickGO ontologyBLASTP
46577854658171387hypothetical proteinBLASTP
465830446595241221hypothetical proteinBLASTP
46595974660097501hypothetical proteinBLASTP
466021146613711161FMN-dependent alpha-hydroxy acid dehydrogenaseQuickGO ontologyBLASTP
466159846630371440Aldehyde DehydrogenaseQuickGO ontologyBLASTP
46633264664255930hypothetical proteinBLASTP
466431246654121101fatty acid desaturaseQuickGO ontologyBLASTP
466540946665481140fatty acid desaturaseQuickGO ontologyBLASTP
466654146676651125fatty acid hydroxylaseQuickGO ontologyBLASTP