Pre_GI Gene

Host: NC_013061 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013061:987744 Pedobacter heparinus DSM 2366, complete genome

Host Lineage: Pedobacter heparinus; Pedobacter; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Temp: 25 - 30C; Habitat: Soil. Formerly Sphingobacterium heparinum this organism was isolated from soil. This organism is able to degrade heparin and heparan sulfate glycosaminoglycans, which are components of extracellular polysaccharides and the cell surface.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
987744988643900hypothetical proteinBLASTP
988646989173528adenine phosphoribosyltransferaseQuickGO ontologyBLASTP
9893869905581173acyl-CoA dehydrogenase domain proteinQuickGO ontologyBLASTP
990633991004372hypothetical protein
991158991352195ribosomal protein S21QuickGO ontologyBLASTP
991477992361885integrase family proteinQuickGO ontologyBLASTP
992376992723348ribosomal subunit interface proteinQuickGO ontologyBLASTP
99293199300373tRNA-ThrQuickGO ontology
99304199312686tRNA-TyrQuickGO ontologyBLASTP
99313499320976tRNA-GlyQuickGO ontology
99324999332375tRNA-ThrQuickGO ontology
9934429946291188translation elongation factor TuQuickGO ontologyBLASTP
99474299481574tRNA-TrpQuickGO ontology
994826995023198preprotein translocase SecE subunitQuickGO ontologyBLASTP
995033995575543transcription terminationantitermination factor NusGQuickGO ontologyBLASTP
995640996083444ribosomal protein L11QuickGO ontologyBLASTP
996107996805699ribosomal protein L1QuickGO ontologyBLASTP
996808997329522ribosomal protein L10QuickGO ontologyBLASTP
997392997766375ribosomal protein L7L12QuickGO ontologyBLASTP
99792110017243804DNA-directed RNA polymerase beta subunitQuickGO ontologyBLASTP
100181710061034287DNA-directed RNA polymerase beta subunitQuickGO ontologyBLASTP
10061951006509315hypothetical proteinBLASTP
10065061007423918tRNA delta2-isopentenylpyrophosphate transferaseQuickGO ontologyBLASTP
10074231008073651hypothetical proteinBLASTP
100813110095371407Polynucleotide adenylyltransferase regionQuickGO ontologyBLASTP