Pre_GI Gene

Host: NC_013316 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013316:1 Clostridium difficile R20291, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
94509857408anti-sigma-B factor serine-protein kinaseQuickGO ontologyBLASTP
985710630774RNA polymerase sigma-B factorQuickGO ontologyBLASTP
1071612345163016S ribosomal RNAQuickGO ontologyBLASTP
1259815548295123S ribosomal RNAQuickGO ontologyBLASTP
15610157261175S ribosomal RNAQuickGO ontologyBLASTP
1585316362510putative small-molecule-binding proteinQuickGO ontologyBLASTP
1637417255882putative mechanosensitive ion channel proteinQuickGO ontologyBLASTP
17713189841272seryl-tRNA synthetaseQuickGO ontologyBLASTP
1930419759456putative cytosineadenosine deaminaseQuickGO ontologyBLASTP
20230218671638DNA polymerase III subunit gammatauQuickGO ontologyBLASTP
2192622276351hypothetical proteinBLASTP
2228922888600recombination proteinQuickGO ontologyBLASTP
23321245261206putative glycosyl transferaseQuickGO ontologyBLASTP
2494526723177916S ribosomal RNAQuickGO ontologyBLASTP
2682029770295123S ribosomal RNAQuickGO ontologyBLASTP
29899300151175S ribosomal RNAQuickGO ontologyBLASTP
3393034343414hypothetical proteinBLASTP
34652380833432pyruvate carboxylaseQuickGO ontologyBLASTP
38325402531929putative translation elongation factorQuickGO ontologyBLASTP
4070641170465transcriptional regulatorQuickGO ontologyBLASTP
4117741671495putative DNA repair proteinQuickGO ontologyBLASTP
41687427121026putative ATPguanido phosphotransferaseQuickGO ontologyBLASTP
42897451462250ATP-dependent Clp proteaseQuickGO ontologyBLASTP
45326466991374DNA repair proteinQuickGO ontologyBLASTP
46702477721071putative DNA-binding proteinQuickGO ontologyBLASTP
47861489551095hypothetical proteinBLASTP