Pre_GI Gene

Host: NC_013316 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013316:120759 Clostridium difficile R20291, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
120759121706948DNA-directed RNA polymerase alpha chainQuickGO ontologyBLASTP
12172712206834250S ribosomal protein L17QuickGO ontologyBLASTP
122188123021834ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
123054123875822ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
123965124672708ABC transporter permease proteinQuickGO ontologyBLASTP
124704125435732tRNA pseudouridine synthase 1QuickGO ontologyBLASTP
12555512589734350S ribosomal protein L13 pseudogeneQuickGO ontologyBLASTP
12601512640739330S ribosomal protein S9QuickGO ontologyBLASTP
126866127618753germination-specific N-acetylmuramoyl-L-alanine amidaseQuickGO ontologyBLASTP
127805129435163116S ribosomal RNAQuickGO ontologyBLASTP
129786132416263123S ribosomal RNAQuickGO ontologyBLASTP
133029134660163216S ribosomal RNAQuickGO ontologyBLASTP
135270137865259623S ribosomal RNAQuickGO ontologyBLASTP
1379381380541175S ribosomal RNAQuickGO ontologyBLASTP
1382681394521185aspartate aminotransferaseQuickGO ontologyBLASTP
1398251421762352anaerobic ribonucleoside-triphosphate reductaseQuickGO ontologyBLASTP
142198142737540anaerobic ribonucleoside-triphosphate reductase activating proteinQuickGO ontologyBLASTP
144561147513295323S ribosomal RNAQuickGO ontologyBLASTP
1475861477021175S ribosomal RNAQuickGO ontologyBLASTP
149443150282840hypothetical proteinBLASTP
1503481514601113hypothetical proteinBLASTP
151457151576120hypothetical proteinBLASTP
151749152666918phosphate butyryltransferaseQuickGO ontologyBLASTP
1526881537671080butyrate kinaseQuickGO ontologyBLASTP
153826154434609putative ATPGTP-binding proteinQuickGO ontologyBLASTP
154477154692216ferredoxinQuickGO ontologyBLASTP
1547211558001080putative oxidoreductase thiamine diP-binding subunitQuickGO ontologyBLASTP
155800156552753putative subunit of oxidoreductaseQuickGO ontologyBLASTP
156553157110558putative subunit of oxidoreductaseQuickGO ontologyBLASTP