Pre_GI Gene

Host: NC_013316 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013316:3056925 Clostridium difficile R20291, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30566153056935321hypothetical proteinBLASTP
305692530589161992hypothetical proteinBLASTP
305903830615812544putative surface proteinQuickGO ontologyBLASTP
30623253063002678putative sortase BQuickGO ontologyBLASTP
30632773066229295323S ribosomal RNAQuickGO ontologyBLASTP
30663873068009162316S ribosomal RNAQuickGO ontologyBLASTP
30682613069199939putative polysaccharide deacetylaseQuickGO ontologyBLASTP
306957230709451374hypothetical proteinBLASTP
307113230724541323two-component sensor histidine kinaseQuickGO ontologyBLASTP
30724473073151705two-component response regulatorQuickGO ontologyBLASTP
307333430743981065hypothetical proteinBLASTP
30744013075099699putative polysaccharide deacetylaseQuickGO ontologyBLASTP
307509030761871098putative UDP-N-acetylglucosamine--N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferaseQuickGO ontologyBLASTP
307651030777541245putative serine hydroxymethyltransferaseQuickGO ontologyBLASTP
30780833078871789hypothetical proteinBLASTP
30788713079344474hypothetical proteinBLASTP