Pre_GI Gene

Host: NC_013316 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013316:81969 Clostridium difficile R20291, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8196982463495dihydrofolate reductase regionQuickGO ontologyBLASTP
82490838661377hypothetical proteinBLASTP
8419384942750thiamine biosynthesis protein thicQuickGO ontologyBLASTP
8510885410303putative thymidylate synthaseQuickGO ontologyBLASTP
8541486160747putative tRNArRNA methyltransferaseQuickGO ontologyBLASTP
8616386690528hypothetical proteinBLASTP
8674087402663RNA polymerase sigma-H factorQuickGO ontologyBLASTP
87476886691194elongation factor TUQuickGO ontologyBLASTP
889198906815050S ribosomal protein L33QuickGO ontologyBLASTP
8909489315222preprotein translocase SecE subunitQuickGO ontologyBLASTP
8933589877543transcription antitermination proteinQuickGO ontologyBLASTP
899139033842650S ribosomal protein L11QuickGO ontologyBLASTP
904089110669950S ribosomal protein L1QuickGO ontologyBLASTP
913299183550750S ribosomal protein L10QuickGO ontologyBLASTP
918939225836650S ribosomal protein L7L12QuickGO ontologyBLASTP
9265093438789NADP-dependent 7-alpha-hydroxysteroid dehydrogenaseQuickGO ontologyBLASTP
93909976253717DNA-directed RNA polymerase beta chainQuickGO ontologyBLASTP
976671011523486DNA-directed RNA polymerase beta chainQuickGO ontologyBLASTP
10143810186342630S ribosomal protein S12QuickGO ontologyBLASTP
10198610245647130S ribosomal protein S7QuickGO ontologyBLASTP
1025051045712067translation elongation factor GQuickGO ontologyBLASTP
1046621058551194elongation factor TUQuickGO ontologyBLASTP
10622810653931230S ribosomal protein S10QuickGO ontologyBLASTP
10663110726063050S ribosomal protein L3QuickGO ontologyBLASTP
10726010791365450S ribosomal protein L4QuickGO ontologyBLASTP
10791310820329150S ribosomal protein L23QuickGO ontologyBLASTP
10823310906383150S ribosomal protein L2QuickGO ontologyBLASTP
10909810937928230S ribosomal protein S19QuickGO ontologyBLASTP
10941110974633650S ribosomal protein L22QuickGO ontologyBLASTP
10976911058481630S ribosomal protein S3QuickGO ontologyBLASTP
11062011105143250S ribosomal protein L16QuickGO ontologyBLASTP
11105311125620450S ribosomal protein L29QuickGO ontologyBLASTP