Pre_GI Gene

Host: NC_013552:68003 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013552:68003 Dehalococcoides sp. VS, complete genome

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: Isolation: Texas; Country: USA; Temp: Mesophile; Habitat: Fresh water, Groundwater. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6800368743741radical SAM domain proteinQuickGO ontologyBLASTP
6874969528780adenosylcobinamide amidohydrolase CbiZQuickGO ontologyBLASTP
6955870382825radical SAM domain proteinQuickGO ontologyBLASTP
7039871120723tetrapyrrole methylase precorrin-6Y C515-methyltransferaseQuickGO ontologyBLASTP
7112571871747radical SAM domain proteinQuickGO ontologyBLASTP
7187472626753PP-loop ATPaseQuickGO ontologyBLASTP
7281573114300reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
73132745561425reductive dehalogenaseQuickGO ontologyBLASTP
7460175023423hypothetical protein
75451787053255histidine kinaseQuickGO ontologyBLASTP
7870279382681DNA-binding response regulatorQuickGO ontologyBLASTP
7955980242684DNA-binding response regulatorQuickGO ontologyBLASTP
8074781022276reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
81035825731539reductive dehalogenaseQuickGO ontologyBLASTP
8291183189279transposase IS3IS911-familyQuickGO ontologyBLASTP
8322284025804transposaseQuickGO ontologyBLASTP
8405284783732DNA-binding response regulator LuxR familyQuickGO ontologyBLASTP
84784858751092sensor histidine kinaseQuickGO ontologyBLASTP
86454887332280sensor histidine kinaseQuickGO ontologyBLASTP
8880789493687DNA-binding response regulatorQuickGO ontologyBLASTP
8968190409729PP-loop ATPaseQuickGO ontologyBLASTP
90484919741491reductive dehalogenaseQuickGO ontologyBLASTP
9199892264267reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
9241992694276reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
92719941311413reductive dehalogenaseQuickGO ontologyBLASTP
9419894947750radical SAM domain proteinQuickGO ontologyBLASTP
94970964541485radical SAMB12 binding domain proteinQuickGO ontologyBLASTP
9649396957465hypothetical proteinBLASTP
9712797399273reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
97423989941572reductive dehalogenaseQuickGO ontologyBLASTP
992101024223213histidine kinase CheY-like domain proteinQuickGO ontologyBLASTP
102422103099678DNA-binding response regulatorQuickGO ontologyBLASTP