Pre_GI Gene

Host: NC_013716:4306695 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:4306695 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
43103574311034678ISCro1 transposase AQuickGO ontologyBLASTP
43110344311381348ISCro1 transposase BQuickGO ontologyBLASTP
431140143129721572ISCro1 transposase CQuickGO ontologyBLASTP
43134684313878411hypothetical proteinBLASTP
43139064314553648BLASTP
43145294315026498hypothetical protein
43171764317322147BLASTP
43224564322566111hypothetical protein
43227884322958171hypothetical protein
43235094323637129hypothetical protein
43258554325983129hypothetical protein
43259774326255279putative T3SS effector protein EspOQuickGO ontologyBLASTP
43263744326952579hypothetical protein
43272814327412132hypothetical protein
43276524328221570T3SS effector protein EspTQuickGO ontologyBLASTP
43282554328422168hypothetical protein
43284454328765321hypothetical protein
43287824329174393hypothetical protein
43291904329399210hypothetical protein
43300254330666642putative T3SS effector protein NleG8QuickGO ontologyBLASTP
43308304331414585putative T3SS effector protein EspM2QuickGO ontologyBLASTP
43333154333674360putative SOS response proteinQuickGO ontologyBLASTP
43337344334015282hypothetical protein
43341704334742573hypothetical protein
433477643359961221putative ABC transporter membrane proteinQuickGO ontologyBLASTP
433599843381512154putative ABC transporter ATP-bindingmembrane proteinQuickGO ontologyBLASTP
43382464338584339BLASTP
43386224338864243hypothetical protein
43396074339915309hypothetical protein
43399924340114123hypothetical protein
43404394340801363BLASTP
434098143421741194purine ribonucleoside efflux pump NepIQuickGO ontologyBLASTP
434227143436471377putative maltoporinQuickGO ontologyBLASTP
43438464344148303putative PTS system protein component IIAQuickGO ontologyBLASTP
434416143455431383putative glycosyl hydrolaseQuickGO ontologyBLASTP
434556443468951332putative PTS system protein component EIIcQuickGO ontologyBLASTP
43469104347224315PTS system cellobiose-specific IIb componentQuickGO ontologyBLASTP
43475154348471957putative LacI-family transcriptional regulatorQuickGO ontologyBLASTP
43487094349125417putative acetyltransferaseQuickGO ontologyBLASTP
43491764350078903hypothetical proteinBLASTP
43502704350791522hypothetical proteinBLASTP
43508384351356519putative fimbrial subunitQuickGO ontologyBLASTP
43513494351870522putative fimbrial subunitQuickGO ontologyBLASTP
43518844352882999putative fimbrial subunitQuickGO ontologyBLASTP
43529024353603702putative fimbrial chaperone proteinQuickGO ontologyBLASTP
435359643559532358putative fimbrial usher proteinQuickGO ontologyBLASTP
43560194356546528putative fimbrial subunitQuickGO ontologyBLASTP
435688343607313849putative adhesin autotransporterQuickGO ontologyBLASTP
43609404361440501putative DNA binding proteinQuickGO ontologyBLASTP
43616534362483831transcriptional regulator of virulence RegAQuickGO ontologyBLASTP
43626114363198588putative LuxR-family transcriptional regulatorQuickGO ontologyBLASTP
43633264364114789hypothetical proteinBLASTP
43641394364756618putative LuxR-family transcriptional regulatorQuickGO ontology
43651774365449273hypothetical protein
43655194366469951hypothetical protein
43669404367182243putative tight adherence fimbrial subunitQuickGO ontology
43673684368240873putative tight adherence protein RcpCQuickGO ontologyBLASTP
436829643697441449putative tight adherence secretin RcpAQuickGO ontologyBLASTP
436976843709011134putative tight adherence protein TadZQuickGO ontologyBLASTP
437095543722381284putative tight adherence protein AQuickGO ontologyBLASTP
43722384373140903putative tight adherence protein BQuickGO ontologyBLASTP
43731494374000852putative tight adherence protein CQuickGO ontologyBLASTP
437398543752891305putative tight adherence protein DQuickGO ontologyBLASTP
43753134375771459hypothetical protein
43758144376176363hypothetical proteinBLASTP
43762254376587363hypothetical proteinBLASTP
43766274376890264hypothetical protein
43768874377447561putative ATP binding proteinQuickGO ontologyBLASTP
43774444377899456hypothetical protein
43779114378459549hypothetical protein
43784734378916444putative prepilin peptidase TadVQuickGO ontologyBLASTP
43789584379470513putative tight adherence protein TadEQuickGO ontologyBLASTP
43794394380050612putative tight adherence protein TadFQuickGO ontologyBLASTP
438006443820071944putative tight adherence protein TadGQuickGO ontologyBLASTP
438202743833161290hypothetical proteinBLASTP
43833924384003612BLASTP
4384198438428891tRNA-SecQuickGO ontologyBLASTP
438457843859691392putative carbohydrate transporterQuickGO ontologyBLASTP
438597243882902319putative glycosyl hydrolaseQuickGO ontologyBLASTP
438839043900991710hypothetical proteinBLASTP
439022043916111392putative purine permeaseQuickGO ontologyBLASTP
439183343930381206sodiumglutamate symport carrier protein glutamate permeaseQuickGO ontologyBLASTP
439308243951632082ATP-dependent DNA helicaseQuickGO ontologyBLASTP
43951694395858690tRNA guanosine-2-O-methyltransferaseQuickGO ontologyBLASTP
439586343979802118guanosine-35-bisdiphosphate 3-pyrophosphohydrolaseQuickGO ontologyBLASTP
43979994398274276DNA-directed RNA polymerase omega chainQuickGO ontologyBLASTP