Pre_GI Gene

Host: NC_014323:4665610 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:4665610 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
46656104666374765multidrug ABC transporter permeaseQuickGO ontologyBLASTP
46663714667282912multidrug ABC transporter ATPaseQuickGO ontologyBLASTP
46675894667882294hypothetical protein
46679114668552642signal peptide proteinQuickGO ontologyBLASTP
46687684669508741surface lipoprotein VacJ transmembrane proteinQuickGO ontologyBLASTP
46695054669981477organic solvents resistance ABC transporter periplasmic proteinQuickGO ontologyBLASTP
46700444670823780organic solvents resistance ABC transporter permeaseQuickGO ontologyBLASTP
46708204671551732organic solvents resistance ABC transporter ATPaseQuickGO ontologyBLASTP
467201446731081095GTP-binding proteinQuickGO ontologyBLASTP
46733564673646291hypothetical proteinBLASTP
46737414674280540hypothetical proteinBLASTP
46744594674794336hypothetical proteinBLASTP
467491046768891980DNA mismatch repair proteinQuickGO ontologyBLASTP
467707246812234152hypothetical proteinBLASTP
46812484681934687hypothetical protein
46820614682270210hypothetical protein
46823924682766375hypothetical protein
46828284683679852hypothetical protein
46836874684469783hypothetical protein
468465146857211071hypothetical protein
46859074686440534hypothetical protein
46865394687297759hypothetical proteinBLASTP
46876324688414783hypothetical proteinBLASTP
468860746907152109hypothetical proteinBLASTP
46908624691821960hypothetical protein
469191346933491437hypothetical protein
469384146948841044hypothetical proteinBLASTP
469522646965451320HipA domain-containing proteinQuickGO ontologyBLASTP
46965784696931354hypothetical protein
46972584697491234hypothetical proteinBLASTP
469854546998101266bacteriophage integraserecombinaseQuickGO ontologyBLASTP
469996547015271563hypothetical proteinBLASTP
470152447036262103hypothetical proteinBLASTP
47036074704062456hypothetical proteinBLASTP
47043644704615252hypothetical proteinBLASTP
470504447063301287major facilitator superfamily proteinQuickGO ontologyBLASTP
470634747087582412glucosidaseQuickGO ontologyBLASTP
470881347100241212porin transmembrane proteinQuickGO ontologyBLASTP
47101444711061918LysR family transcription regulator proteinQuickGO ontologyBLASTP
47111914711949759LamBYcsF family proteinQuickGO ontologyBLASTP
47119804712228249biotin carboxyl carrier proteinQuickGO ontologyBLASTP
471223947136271389acyl-CoA carboxylase biotin subunitQuickGO ontologyBLASTP
47136294714528900allophanate hydrolase subunit 1QuickGO ontologyBLASTP
47145184715495978allophanate hydrolase subunit 2QuickGO ontologyBLASTP
471568847171031416hypothetical protein