Pre_GI Gene

Host: NC_015379:1887275 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015379:1887275 Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,

Host Lineage: Pseudomonas brassicacearum; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas brassicacearum is a Gram-negative soil bacterium that infects the roots of Brassica napus, from which it derives its name. Based on 16S rRNA analysis, P. brassicacearum falls within the P. fluorescens group. It has also been shown to have both pathogenic and plant growth-promoting effects on tomato plants.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
188727518883691095Prephenate dehydratase bifunctional chorismate mutase P and prephenate dehydrataseQuickGO ontologyBLASTP
188838318894951113histidinol-phosphate aminotransferaseQuickGO ontologyBLASTP
1889524189173122083-phosphoshikimate 1-carboxyvinyltransferase bifunctional protein prephenate dehydrogenase3-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
18917281892417690Cytidylate kinaseQuickGO ontologyBLASTP
18925381894226168930S ribosomal protein S1QuickGO ontologyBLASTP
18944531894731279putative lipoproteinQuickGO ontologyBLASTP
18948681895164297putative Transcription factor unclassifiedQuickGO ontologyBLASTP
18951911895415225Conserved hypothetical protein putative membrane proteinQuickGO ontologyBLASTP
189560418966531050putative chain length determinant proteinQuickGO ontologyBLASTP
189760218989151314Putative UDP-glucose 6-dehydrogenaseUDP-glucoseGDP-mannose dehydrogenase WbpAQuickGO ontologyBLASTP
18990451899905861oxidoreductase WpbBQuickGO ontologyBLASTP
18999621900606645Putative acetyltransferase WbpDQuickGO ontologyBLASTP
190059919016931095putative aminotransferase WbpEQuickGO ontologyBLASTP
190173919031061368Putative polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
190311519043561242Hypothetical protein membrane proteinQuickGO ontology
19043531905243891putative glycosyl transferaseQuickGO ontologyBLASTP
190525019063981149Putative LPS biosynthesis protein WbpGQuickGO ontologyBLASTP
19063951907009615putative imidazole glycerol phosphate synthase subunit HisHQuickGO ontologyBLASTP
19070381907793756Putative imidazole glycerol phosphate synthase subunit HisFQuickGO ontologyBLASTP
190782519088591035Putative polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
190886519099831119NAD dependent epimerasedehydrataseQuickGO ontologyBLASTP
190999419111361143UDP-N-acetylglucosamine2-epimeraseQuickGO ontologyBLASTP
191114519124041260putative glycosyltransferaseQuickGO ontologyBLASTP
19124041913369966NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
191336619143821017Putative glycosyltransferase WbpLQuickGO ontologyBLASTP
191446219162671806nucleotide sugar epimerasedehydratase WbpMQuickGO ontologyBLASTP
191668619185451860putative transmembrane proteinQuickGO ontologyBLASTP