Pre_GI Gene

Host: NC_016582:10227196 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016582:10227196 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10227196102285241329hypothetical proteinBLASTP
1022848110228747267hypothetical protein
1022891310229218306hypothetical protein
1022968010230591912LysR family transcriptional regulatorQuickGO ontologyBLASTP
1023063710231404768integrase catalytic subunitQuickGO ontologyBLASTP
1023141410231734321hypothetical proteinBLASTP
1023181710232128312integrase catalytic regionQuickGO ontologyBLASTP
1023228710232445159hypothetical protein
1023244610232574129transposaseQuickGO ontologyBLASTP
1023263510232838204hypothetical protein
10232911102356552745hypothetical proteinBLASTP
10235652102376912040putative beta-galactosidaseQuickGO ontologyBLASTP
1023789010238714825binding-protein-dependent transport system inner membrane proteinQuickGO ontologyBLASTP
1023888710239855969binding-protein-dependent transport system inner membrane proteinQuickGO ontologyBLASTP
10239861102413931533extracellular solute-binding proteinQuickGO ontologyBLASTP
1024145610242028573hypothetical protein
10242291102433191029LacI family transcriptional regulatorQuickGO ontologyBLASTP
10243560102446061047LacI family transcriptional regulatorQuickGO ontologyBLASTP
1024476310245686924LacI family transcriptional regulatorQuickGO ontologyBLASTP
1024571710246193477lysophospholipase L1-like esteraseQuickGO ontologyBLASTP
10246952102481061155putative beta-galactosidaseQuickGO ontologyBLASTP
10249423102519992577hypothetical proteinBLASTP
1025221210253009798aldoketo reductaseQuickGO ontologyBLASTP
10253070102545511482Oxidoreductase domain proteinQuickGO ontologyBLASTP
1025487810255720843Tn5741 family transposaseQuickGO ontologyBLASTP
1025565010256204555hypothetical proteinBLASTP
1025633010256902573integrase catalytic regionQuickGO ontologyBLASTP
1025759810258293696transcriptional regulatorQuickGO ontology
1025876410259711948alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
10259997102603113152-keto-4-pentenoate hydrataseQuickGO ontologyBLASTP
10260814102618931080integrase catalytic regionQuickGO ontologyBLASTP
10262107102635611455aldehyde dehydrogenaseQuickGO ontologyBLASTP
1026364910264416768putative short chain dehydrogenaseQuickGO ontologyBLASTP
10264461102656271167acetyl-CoA acyltransferaseQuickGO ontologyBLASTP
1026569410266491798enoyl-CoA hydrataseQuickGO ontologyBLASTP
10266735102679431209acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
10267940102695741635long-chain-fatty-acid--CoA ligaseQuickGO ontologyBLASTP
10269571102707761206L-carnitine dehydratasebile acid-inducible protein FQuickGO ontologyBLASTP
10270791102718191029luciferase family proteinQuickGO ontologyBLASTP
10271831102729971167acyl-CoA dehydrogenaseQuickGO ontologyBLASTP