Pre_GI Gene

Host: NC_016582:1639375 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016582:1639375 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
163937516408891515two-component system sensor kinaseQuickGO ontologyBLASTP
16409151641595681two-component system response regulatorQuickGO ontologyBLASTP
164209916454223324subtilisin-like proteaseQuickGO ontologyBLASTP
16456321645760129hypothetical proteinBLASTP
164565516467941140transposaseQuickGO ontologyBLASTP
164726816483321065hypothetical proteinBLASTP
16486471649390744hypothetical protein
16495721649988417hypothetical proteinBLASTP
16501081650326219transposase IS4QuickGO ontologyBLASTP
16503231650556234putative transposaseQuickGO ontologyBLASTP
165068716518201134IS4 family transposaseQuickGO ontologyBLASTP
16520131652366354glyoxalasebleomycin resistance proteindioxygenaseQuickGO ontologyBLASTP
16525341652938405integraseQuickGO ontologyBLASTP
16529371653116180hypothetical proteinBLASTP
16531351653443309hypothetical protein
16537181654050333hypothetical proteinBLASTP
165419116552401050radical SAM domain-containing proteinQuickGO ontologyBLASTP
16555451655682138hypothetical protein
16564301656594165transmembrane efflux proteinQuickGO ontology
16569101657806897putative transcriptional regulatorQuickGO ontologyBLASTP
16579371658719783putative hydrolaseQuickGO ontologyBLASTP
16587751659419645TrkA domain-containing proteinQuickGO ontologyBLASTP
16596231659787165hypothetical proteinBLASTP
16599471660126180short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
16605771661089513integraseQuickGO ontologyBLASTP
16611241661675552hypothetical proteinBLASTP
16618031662237435integrase catalytic regionQuickGO ontologyBLASTP
16622681662381114hypothetical protein
166262116654342814putative regulatory protein phosphataseQuickGO ontologyBLASTP
16662391666541303hypothetical protein
16669051667873969integrase catalytic regionQuickGO ontologyBLASTP
166796616689941029hypothetical proteinBLASTP
16690291669586558hypothetical proteinBLASTP
16697531669866114hypothetical protein
16700961670230135hypothetical protein
167024916713461098hypothetical proteinBLASTP
16714491672330882hypothetical proteinBLASTP
16723861672601216hypothetical proteinBLASTP
16728261673122297integraseQuickGO ontologyBLASTP
16732301673907678hypothetical proteinBLASTP
16741241674237114hypothetical protein
16742341674404171hypothetical proteinBLASTP
16744321675154723putative hydrolaseQuickGO ontologyBLASTP
16753111675883573putative TetR family regulatorQuickGO ontologyBLASTP
167631116773781068NADHflavin oxidoreductaseQuickGO ontologyBLASTP
167800416800222019AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
16800651680976912putative acetyl-hydrolaseQuickGO ontologyBLASTP
16811031681618516methylmalonate-semialdehyde dehydrogenaseQuickGO ontologyBLASTP
168261316836261014zinc-binding dehydrogenaseQuickGO ontologyBLASTP
16839751684448474HxlR family transcriptional regulatorQuickGO ontologyBLASTP
16845551684992438hypothetical protein
16852681685735468alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
16859301686406477hypothetical protein
16865691687075507alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
168715016882921143transmembrane efflux proteinQuickGO ontologyBLASTP