Pre_GI: Gene

	Host: NC_016860:3029272		NEIGHBOURS		BLASTN		Download Island sequence		Download Island gene sequence(s)

NC_016860:3029272 Salmonella enterica subsp. enterica serovar Typhimurium str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. This strain was isolated in Japan in 2000. It is of definitive phage type 12 (DT12) and resistant against mulitple antimicrobials including fluoroquinolones.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Start	End	Length	CDS description	QuickGO ontology	BLASTP
3029272	3029616	345	hypothetical protein		BLASTP
3029798	3030715	918	periplasmic chelated iron-binding protein YfeA	QuickGO ontology	BLASTP
3030712	3031533	822	iron transport protein ATP-binding component	QuickGO ontology	BLASTP
3031530	3032390	861	iron transport protein inner membrane component	QuickGO ontology	BLASTP
3032381	3033229	849	chelated iron ABC transporter permease protein YfeD	QuickGO ontology	BLASTP
3033328	3034194	867	secreted effector protein	QuickGO ontology	BLASTP
3034397	3035152	756	putative AraC family transcriptional regulator	QuickGO ontology	BLASTP
3035537	3036424	888	hypothetical protein		BLASTP
3036769	3037131	363	putative cytoplasmic protein	QuickGO ontology	BLASTP
3037218	3037898	681	oxygen-regulated invasion protein	QuickGO ontology	BLASTP
3037855	3038433	579	cell invasion protein	QuickGO ontology	BLASTP
3038426	3039184	759	pathogenicity 1 island effector protein	QuickGO ontology	BLASTP
3039181	3039486	306	pathogenicity 1 island effector protein	QuickGO ontology	BLASTP
3039505	3039747	243	pathogenicity 1 island effector protein	QuickGO ontology	BLASTP
3039772	3040836	1065	cell invasion protein	QuickGO ontology	BLASTP
3041266	3042195	930	transcriptional regulator HilD	QuickGO ontology	BLASTP
3043286	3044947	1662	invasion protein regulator	QuickGO ontology	BLASTP
3044965	3045447	483	cell invasion protein	QuickGO ontology	BLASTP
3045501	3047132	1632	protein tyrosine phosphataseGTPase activating protein	QuickGO ontology	BLASTP
3047119	3047511	393	secretion system chaperone	QuickGO ontology	BLASTP
3047538	3047798	261	hypothetical protein		BLASTP
3047842	3048090	249	acyl carrier protein	QuickGO ontology	BLASTP
3048109	3050166	2058	secreted effector protein	QuickGO ontology	BLASTP
3050185	3051216	1032	translocation machinery component	QuickGO ontology	BLASTP
3051287	3052516	1230	pathogenicity 1 island effector protein	QuickGO ontology	BLASTP
3052544	3054325	1782	cell invasion protein	QuickGO ontology	BLASTP
3054328	3054825	498	type III secretion low calcium response chaperone LcrHSycD	QuickGO ontology	BLASTP
3054963	3056033	1071	surface presentation of antigens protein SpaS	QuickGO ontology	BLASTP
3056020	3056811	792	type III secretion system apparatus protein SpaRYscTHrcT	QuickGO ontology	BLASTP
3056815	3057075	261	protein EpaQ	QuickGO ontology	BLASTP
3057101	3057775	675	surface presentation of antigens protein SpaP	QuickGO ontology	BLASTP
3057765	3058676	912	surface presentation of antigens protein SpaO	QuickGO ontology	BLASTP
3058676	3059686	1011	needle length control protein	QuickGO ontology	BLASTP
3059686	3060129	444	surface presentation of antigens protein SpaM	QuickGO ontology	BLASTP
3060107	3061402	1296	flagellum-specific ATP synthase SpaL	QuickGO ontology	BLASTP
3061399	3061806	408	surface presentation of antigens protein SpaK	QuickGO ontology	BLASTP
3061830	3063887	2058	invasion protein InvA	QuickGO ontology	BLASTP
3063912	3065030	1119	invasion protein InvE	QuickGO ontology	BLASTP
3065027	3066715	1689	type III secretion outer membrane pore YscCHrcC family	QuickGO ontology	BLASTP
3066712	3067461	750	invasion protein	QuickGO ontology	BLASTP
3067819	3068262	444	cell adheranceinvasion protein	QuickGO ontology	BLASTP
3068693	3069142	450	putative cytoplasmic protein	QuickGO ontology	BLASTP
3069127	3069474	348	hypothetical protein		BLASTP
3069747	3070073	327	putative cytoplasmic protein	QuickGO ontology	BLASTP
3070771	3071052	282	ABC transporter permease	QuickGO ontology	BLASTP
3071049	3071576	528	pathogenicity island protein	QuickGO ontology	BLASTP
3071649	3071789	141	putative cytoplasmic protein	QuickGO ontology	BLASTP
3072201	3072857	657	serinethreonine protein phosphatase 2	QuickGO ontology	BLASTP
3073029	3073214	186	putative cytoplasmic protein	QuickGO ontology	BLASTP
3073709	3076276	2568	DNA mismatch repair protein MutS	QuickGO ontology	BLASTP
3076332	3076712	381	putative cytoplasmic protein	QuickGO ontology	BLASTP
3076709	3077917	1209	major facilitator family transporter	QuickGO ontology	BLASTP
3078026	3078937	912	putative transcriptional regulator	QuickGO ontology	BLASTP
3078979	3080475	1497	putative permease	QuickGO ontology	BLASTP
3080472	3081422	951	putative nucleoside-diphosphate-sugar epimerase	QuickGO ontology	BLASTP
3081462	3082238	777	hypothetical protein		BLASTP
3082243	3082881	639	putative aldolase	QuickGO ontology	BLASTP
3082878	3084140	1263	putative tRNA synthase	QuickGO ontology	BLASTP
3084134	3085057	924	hypothetical protein		BLASTP

Pre_GI Gene