Pre_GI Gene

Host: NC_017328:3088907 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017328:3088907 Shigella flexneri 2002017 chromosome, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
308890730911022196Ornithine decarboxylase isozymeQuickGO ontologyBLASTP
30914403092147708Na channel or pumpQuickGO ontologyBLASTP
3092253309232573tRNA-PheQuickGO ontologyBLASTP
309252630937881263Site-specific recombinase phage integrase family proteinQuickGO ontologyBLASTP
309424130977563516putative superfamily I DNA helicaseQuickGO ontologyBLASTP
30980963098461366putative transposaseQuickGO ontologyBLASTP
30990663099866801hypothetical proteinBLASTP
310022731040843858Serine proteaseQuickGO ontologyBLASTP
31041313104871741hypothetical proteinBLASTP
31051143105521408putative transposaseQuickGO ontologyBLASTP
31055873106093507putative transposaseQuickGO ontologyBLASTP
31061803107094915putative transposaseQuickGO ontologyBLASTP
31071573107375219IS1414 transposaseQuickGO ontologyBLASTP
310752631116444119Serine protease pic precursorQuickGO ontologyBLASTP
31093443109529186Toxin subunit Set1BQuickGO ontologyBLASTP
31095333110066534Toxin subunit Set1AQuickGO ontologyBLASTP
31118093112195387IS629 ORF2QuickGO ontologyBLASTP
311237231136461275Reverse transcriptase-like proteinQuickGO ontologyBLASTP
31138523114277426hypothetical proteinBLASTP
31143123114563252hypothetical proteinBLASTP
31144903114969480IS629 ORF2QuickGO ontologyBLASTP
31149693115295327IS629 orfAQuickGO ontologyBLASTP
31155783116003426hypothetical proteinBLASTP
31160003116383384hypothetical proteinBLASTP
31173043117663360IS911 orfAQuickGO ontologyBLASTP
31180083118607600hypothetical proteinBLASTP
31193243119689366IS2 ORF1QuickGO ontologyBLASTP
31196963120124429Insertion element IS2 proteinQuickGO ontologyBLASTP
31197143120553840IS2 orfBQuickGO ontologyBLASTP
31212363122150915hypothetical proteinBLASTP
31224123122618207Regulator of excisionQuickGO ontologyBLASTP
31227043123276573hypothetical proteinBLASTP
31232783123562285hypothetical proteinBLASTP
31235123123676165Iso-IS1 ORF2QuickGO ontologyBLASTP
31248453125819975hypothetical proteinBLASTP
31259753126847873putative GTPaseQuickGO ontologyBLASTP
312717531303033129Outer membrane fluffing proteinQuickGO ontologyBLASTP
313042431329402517hypothetical proteinBLASTP
31330163133471456hypothetical proteinBLASTP
31334893133617129hypothetical proteinBLASTP
31335903133778189hypothetical proteinBLASTP
31338823134700819hypothetical proteinBLASTP
31349703135515546hypothetical proteinBLASTP
31355163136007492putative RADC family DNA repair proteinQuickGO ontologyBLASTP
31360943136315222YeeTQuickGO ontologyBLASTP
31363953136772378Intergenic-region proteinQuickGO ontologyBLASTP
31368193137196378hypothetical proteinBLASTP
31371933137681489hypothetical proteinBLASTP
31377013137898198hypothetical proteinBLASTP
31379833138825843hypothetical proteinBLASTP
31395573139847291hypothetical proteinBLASTP
31402413140549309putative transposaseQuickGO ontologyBLASTP
31405463141412867IS3 orfBQuickGO ontologyBLASTP
31415163141983468putative tight adherance operon proteinQuickGO ontologyBLASTP
31420493142288240hypothetical proteinBLASTP
31424233143028606Membrane proteinQuickGO ontologyBLASTP
31437603144023264putative IS1 encoded proteinQuickGO ontologyBLASTP
314529731468831587putative permeaseQuickGO ontologyBLASTP
314723831494092172Malate synthase GQuickGO ontologyBLASTP
31494313149835405hypothetical proteinBLASTP
31538733154643771Transcriptional activator for glc operonQuickGO ontologyBLASTP