Pre_GI Gene

Host: NC_020134:1328302 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:1328302 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
13283021329168867AraC family HTH transcriptional regulatorQuickGO ontologyBLASTP
13292041329614411hypothetical proteinBLASTP
13296341330236603nicotinate-nucleotide adenylyltransferase NadDQuickGO ontologyBLASTP
13302391330820582metal dependent phosphohydrolaseQuickGO ontologyBLASTP
13308891331500612signal peptidase LepBQuickGO ontologyBLASTP
13316461332338693integrase catalytic regionQuickGO ontologyBLASTP
133230613335321227transposase for insertion sequence element IS905QuickGO ontologyBLASTP
13337131334123411transposase mutator typeQuickGO ontologyBLASTP
13342501334933684transposase for insertion sequence element IS1081QuickGO ontologyBLASTP
133527513363421068modification methylase MthZIQuickGO ontologyBLASTP
13363741336559186hypothetical protein
13367091337281573putative cytosolic proteinQuickGO ontologyBLASTP
133767413388941221transposase for insertion sequence element IS1081QuickGO ontologyBLASTP
13390761339216141hypothetical protein
13394131339952540putative DNA-binding proteinQuickGO ontologyBLASTP
133997513410151041spermidineputrescine import ATP-binding protein PotAQuickGO ontologyBLASTP
13410161341861846spermidineputrescine transport system permease protein PotBQuickGO ontologyBLASTP
13418551342634780spermidineputrescine transport system permease protein PotCQuickGO ontologyBLASTP
134263113436891059spermidineputrescine transport system substarte-binding protein PotDQuickGO ontologyBLASTP
13437391344359621cyclase family proteinQuickGO ontologyBLASTP
134436313458951533glucose-6-phosphate 1-dehydrogenase ZwfQuickGO ontologyBLASTP
134606413475241461arginine decarboxylase SpeAQuickGO ontologyBLASTP
13475211348156636thymidylate kinase TmkQuickGO ontologyBLASTP