EuGI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004315: Plasmodium falciparum 3D7 chromosome 11, complete sequence

NCBI: NC_004315

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSBLASTNKey Word ConfirmationDownload Island
18800010000012001Island text2.0440333.177339.1942-88000.gbk
215661518112924515Island text3.8327512.512227.3846-156615.gbk
328386931128727419Island text2.0288513.132325.6568-283869.gbk
445793647559917664Island text1.963678.9524615.0749BLASTN-457936.gbk
548782251259924778Island text2.5738810.062817.456-487822.gbk
655892358027521353Island text1.578858.262415.5074-558923.gbk
758950061339323894Island text1.6457512.76622.7296BLASTN-589500.gbk
877100079956028561Island text2.9319613.293627.3008-771000.gbk
981258283746524884Island text2.0747210.15326.69996-812582.gbk
1089596692159925634Island text2.1547610.882822.1106-895966.gbk
111125950*114390817959Island text1.67146.815426.70605-1125950.gbk
121171678*119830726630Island text1.57698.1833712.9918-1171678.gbk
131210000123259922600Island text1.587310.292421.5149-1210000.gbk
141277000130059823599Island text2.846049.9829821.9485-1277000.gbk
151326745134976123017Island text2.321977.7577816.8595-1326745.gbk
161390062142209932038Island text2.0284310.180628.889-1390062.gbk
171483000150028817289Island text2.3546711.071321.2402-1483000.gbk
181487591151368826098Island text2.501311.551114.6902-1487591.gbk
191548183157259924417Island text1.9434311.022618.7812-1548183.gbk
201644908166524720340Island text3.5687110.423823.525-1644908.gbk
211676000170125525256Island text1.974969.6577122.2073-1676000.gbk
221780081180000019920Island text1.539211.575924.936BLASTN-1780081.gbk
231945775197509929325Island text1.9168222.014630.6848-1945775.gbk