EuGI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004317: Plasmodium falciparum 3D7 chromosome 14, complete sequence

NCBI: NC_004317

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSBLASTNKey Word ConfirmationDownload Island
121156623269021125Island text1.927238.4617.2615-211566.gbk
239800042425026251Island text2.107757.7729819.3324BLASTN-398000.gbk
345650047729720798Island text1.645299.5624614.7216BLASTN-456500.gbk
4573500*60067927180Island text2.6041912.431524.0241-573500.gbk
5643913*68636742455Island text2.9278610.905417.3143BLASTN+643913.gbk
672697874609919122Island text1.769719.9489323.6402BLASTN-726978.gbk
7793000*81136818369Island text1.72210.2120.6907-793000.gbk
894733297225324922Island text1.560858.8095816.7986-947332.gbk
91042999106932826330Island text1.529249.4722817.3529-1042999.gbk
101184852120000015149Island text3.4117814.083320.6442BLASTN-1184852.gbk
111309500133009920600Island text2.857710.05418.5786-1309500.gbk
121375567140260827042Island text1.62110.131920.6785-1375567.gbk
131415884144282026937Island text2.7599412.986818.1339BLASTN-1415884.gbk
141575927160000424078Island text2.2243510.426813.163BLASTN-1575927.gbk
151676000170000024001Island text1.605017.6544318.3579BLASTN-1676000.gbk
161724345175136027016Island text4.5513216.01331.9267-1724345.gbk
171797000182526928270Island text3.958819.5573918.5853-1797000.gbk
181893143191909925957Island text2.1054512.421617.516BLASTN-1893143.gbk
192088000210000012001Island text1.5115414.71618.14046BLASTN-2088000.gbk
202128104215159923496Island text2.0151512.046616.0538-2128104.gbk
212262000228309921100Island text1.612698.834778.15568-2262000.gbk
222309117*232959920483Island text1.494611.928512.5228-2309117.gbk
232524856254972024865Island text3.2313510.448123.6367-2524856.gbk
242661956270398542030Island text2.2133911.707218.7562-2661956.gbk
252752500*277624423745Island text2.478413.739824.2671-2752500.gbk
262849500286929219793Island text1.987649.2716415.1906BLASTN-2849500.gbk
272921000293971618717Island text2.131948.803516.622-2921000.gbk