EuGI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_026744: Trypanosoma brucei gambiense DAL972 chromosome 11, complete

NCBI: NC_026744

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSBLASTNKey Word ConfirmationDownload Island
181000*10035519356Island text1.5204131.547924.3432-81000.gbk
214450016259918100Island text1.6169833.434744.9872-144500.gbk
321488423409919216Island text1.5129237.366247.6306-214884.gbk
4546000*56875922760Island text1.4825934.229149.2508+546000.gbk
5580412*60047420063Island text1.6742134.767149.2001-580412.gbk
696061998189421276Island text1.5111835.416728.688-960619.gbk
71089543110859919057Island text1.7005529.562927.5795+1089543.gbk
81187500120246814969Island text1.5152234.186530.765-1187500.gbk
91250000*127209922100Island text1.4666732.24142.6544-1250000.gbk
102086729210016113433Island text1.522231.778942.9955-2086729.gbk
112148180217641328234Island text1.591635.132524.5332-2148180.gbk
122543684256642022737Island text1.5178133.396253.4779-2543684.gbk
132579000*260166522666Island text1.6317627.836245.7425BLASTN+2579000.gbk
142618320263854120222Island text1.6460530.511351.4679BLASTN-2618320.gbk
153195278*322425128974Island text1.8496634.398113.051-3195278.gbk
163724293375063826346Island text1.5694726.05515.6123-3724293.gbk
173838610386567327064Island text1.4432336.132133.2684-3838610.gbk
183945824396702521202Island text1.5620926.617235.053BLASTN-3945824.gbk
194243500426159918100Island text1.5831530.356339.3379-4243500.gbk
204342000436409922100Island text1.5572624.902714.411-4342000.gbk
214467171449045223282Island text1.6432734.116641.3077+4467171.gbk
224511734453160919876Island text1.6897431.953234.2381-4511734.gbk